F09809

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09809

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09809

Determination of introduced cDNA(s)

  • RAFL08-18-E14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-18-E14 - Resource: pda04976

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-18-E14 - full reading 
    TGACTGCAAT TTCTCTCTTT CGCTTCTAAA AAAAAACCTA ACAACCTCTC 
    TTCTCTCTTC CTCGTTCAAC AACAATGGAG TTCTGGGGAG TTGCGGTGAC 
    ACCAAAAAAC GCTACTAAGG TGACTCCTGA AGAAGACAGC CTTGTCCACA 
    TTTCTCAGGC TTCACTTGAC TGCACAGTGA AATCTGGAGA ATCTGTGGTT 
    TTGAGTGTGA CTGTTGGTGG GGCTAAACTT GTTATTGGAA CACTTTCACA 
    AGACAAGTTC CCTCAGATTA GCTTTGATTT GGTTTTTGAT AAAGAGTTTG 
    AGCTTTCACA CAGCGGTACC AAAGCAAATG TTCATTTCAT TGGCTACAAA 
    TCCCCCAACA TCGAGCAGGA TGACTTCACT AGTTCGGATG ATGAGGATGT 
    TCCTGAAGCT GTTCCTGCTC CTGCCCCTAC TGCTGTTACT GCCAACGGAA 
    ATGCTGGAGC AGCTGTTGTC AAGGCTGACA CAAAGCCAAA GGCCAAACCT 
    GCCGAAGTGA AGCCTGCAGA AGAGAAGCCT GAATCAGACG AGGAAGATGA 
    GTCTGATGAT GAAGATGAGT CTGAAGAGGA TGATGACTCT GAGAAAGGAA 
    TGGATGTTGA TGAAGATGAC TCAGATGATG ACGAGGAGGA GGATTCTGAG 
    GATGAAGAAG AGGAGGAGAC TCCTAAGAAG CCTGAGCCAA TCAACAAGAA 
    GAGGCCAAAT GAATCTGTAT CCAAAACACC CGTCTCTGGA AAGAAGGCAA 
    AACCAGCAGC AGCACCAGCT TCTACTCCTC AGAAGACAGA AGAGAAGAAG 
    AAAGGAGGAC ACACCGCCAC ACCACACCCA GCTAAGAAGG GTGGAAAGTC 
    TCCTGTGAAT GCTAACCAGA GCCCCAAGTC TGGAGGTCAA TCATCCGGTG 
    GTAACAACAA CAAGAAGCCA TTCAACTCAG GCAAACAATT TGGTGGTTCC 
    AACAACAAGG GTTCTAACAA GGGCAAGGGA AAGGGTAGAG CTTAAGGACG 
    TGGATCAAGG AGAGGTTTTG GGTTTTCGAG TAGATGATGA AAACACTTGG 
    AAGTGTGGTT TTGGATTTTT ATCTTATTTT ATTAGTATAA CTTGTTATCG 
    GATGAGCTAT TTTGAGTATT TGCAATTTCT ACTTTCCTAT GTAATTCAGT 
    ATATGAATAT TTGCTGAAAT GA

    Gene models with high sequence identity

    1. AT5G22650.1 [+] show detail - histone deacetylase 2B
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G22650.1

    Model type
    Protein coding
    Short Description
    histone deacetylase 2B
    Curator Summary
    Encodes a member of a plant-specific class of histone deacetylases. Controls the development of adaxial/abaxial leaf polarity. Its mRNA is widely expressed in stems, leaves, flowers and young siliques. Plant lines expressing RNAi constructs directed against this gene showed a marked reduction in agrobacterium-mediated root transformation.
    Computational Description
    histone deacetylase 2B (HD2B); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: DNA mediated transformation, negative regulation of transcription, polarity specification of adaxial/abaxial axis; LOCATED IN: cytosol, nucleolus, cell wall, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: histone deacetylase 3 (TAIR:AT3G44750.1); Has 67941 Blast hits to 34482 proteins in 1815 species: Archae - 206; Bacteria - 15660; Metazoa - 22478; Fungi - 9360; Plants - 3234; Viruses - 784; Other Eukaryotes - 16219 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR