F09813

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09813

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09813

Determination of introduced cDNA(s)

  • RAFL04-09-C05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-09-C05 - Resource: pda00200

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-09-C05 - full reading
    ATGACGGCAG GCAACAAGCA AAGCACGAAG TCATCTTCTT CCTATTTCTT 
    CTATTCCTCC TTCTCCACGC TTCTTCTTCT TCTTCCTCAA TCTCTCTTAC
    GATTCCTTCA AATCATTCTT CCATGGCCAC CGTATCTTCT TCCTCCTGGC
    CAAACCCCAA CCCTAATCCC GATTCCACGT CTGCCTCAGA TTCCGATTCT
    ACTTTTCCCT CTCACCGCGA TCGCGTAGAC GAACCCGACT CTCTCGATTC
    CTTCTCCTCC ATGAGTCTTA ACTCCGACGA ACCTAATCAG ACTTCTAATC
    AATCGCCTCT TTCTCCCCCT ACGCCCAATT TACCGGTGAT GCCTCCTCCG
    TCCGTGCTTC ATCTTTCCTT TAACCAAGAT CATGCTTGCT TCGCTGTCGG
    CACTGACCGT GGCTTCCGGA TCCTTAATTG CGATCCCTTT CGCGAGATTT
    TCCGGCGTGA TTTCGATCGT GGCGGTGGTG TTGCAGTCGT GGAGATGCTT
    TTCAGATGCA ATATATTAGC CCTAGTTGGT GGCGGACCTG ATCCTCAATA
    TCCTCCTAAT AAGGTTATGA TTTGGGATGA TCACCAGGGC CGATGTATCG
    GAGAACTCTC TTTCAGGTCC GATGTTAGAT CCGTCCGGCT TAGGAGGGAT
    CGGATTATTG TCGTTCTTGA GCAGAAGATT TTTGTCTACA ATTTCTCTGA
    CCTCAAGCTG ATGCATCAGA TTGAAACCAT TGCCAACCCT AAGGGTTTGT
    GTGCTGTTTC TCAGGGTGTT GGTTCTATGG TTTTGGTATG TCCAGGTTTG
    CAGAAAGGTC AAGTTCGGAT CGAGCACTAC GCTTCTAAAC GGACCAAATT
    CGTCATGGCT CATGATTCCA GAATAGCTTG CTTCGCTCTC ACGCAGGATG
    GCCATTTGTT GGCCACTGCT AGCTCTAAGG GTACTCTGGT TCGGATCTTC
    AATACTGTTG ATGGTACCTT GCGTCAAGAG GTAAGGAGGG GTGCGGATAG
    AGCAGAGATC TACAGTTTGG CCTTCTCTTC AAATGCTCAG TGGTTAGCTG
    TCTCAAGTGA CAAAGGAACG GTCCATGTCT TTGGTCTCAA AGTCAACTCC
    GGATCTCAAG TGAAAGACTC ATCCCGAATT GCACCTGATG CTACTCCCTC
    ATCCCCATCG TCGTCTCTGT CTTTATTCAA AGGAGTGTTA CCGAGGTATT
    TCAGCTCGGA GTGGTCGGTG GCTCAGTTCA GGTTGGTTGA AGGAACTCAG
    TACATAGCCG CCTTTGGCCA TCAAAAGAAC ACCGTTGTTA TTCTTGGCAT
    GGATGGGAGC TTCTACAGAT GCCAGTTTGA TCCGGTGAAC GGCGGTGAAA
    TGTCTCAGCT TGAGTACCAC AACTGTCTGA AACCGCCTTC AGTTTTCTAA
    AAGCTTTACT ACTTATACTC TTTTGTTCCT TCTCTCTCTT TATATCTCTC
    TGCAACTTAA GCGGTGAGAT ATGGTGTATA GTTTTGTGTA TATAATAATG
    ATGGGTCGTC CTATAATTTG TAAAACCTTT TATCGC

    Gene models with high sequence identity

    1. AT3G62770.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D WD40/YVTN repeat-like-containing domain 3.1e-15
    HMMSmart WD40 repeat 340
    HMMSmart WD40 repeat 0.061
    HMMSmart WD40 repeat 0.14
    superfamily WD40 repeat-like-containing domain 6.3e-32
    HMMPanther WIPI-3,4 4.6e-201
    HMMPanther WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINO 4.6e-201
    HMMPfam WD40 repeat, subgroup 0.078
    HMMPfam WD40 repeat, subgroup 0.062

    See the detailed result >

    AT3G62770.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Curator Summary
    Required for autophagosome formation during nutrient deprivation and senescence.
    Computational Description
    AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 1516 Blast hits to 1443 proteins in 266 species: Archae - 0; Bacteria - 93; Metazoa - 578; Fungi - 450; Plants - 210; Viruses - 2; Other Eukaryotes - 183 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR