F09815

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09815

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09815

Determination of introduced cDNA(s)

  • RAFL11-03-L16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-03-L16 - Resource: pda07044

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-03-L16 - full reading 
    ATACCCCCTT TAATTTGTTT GCTCTTAGCC TTTACTTTAT AGTTTTATAT 
    CATATCAATC GACATGGCGA ATGTGGATCG TGATCGGCGT GTGCATGTAG 
    ACCGTACTGA CAAACGTGTT CATCAGCCAA ACTACGAAGA TGATGTCGGT 
    TTTGGTGGCT ATGGCGGTTA TGGTGCTGGT TCTGATTATA AGAGTCGCGG 
    CCCCTCCACT AACCAAATCT TGGCACTTAT AGCAGGAGTT CCCATTGGTG 
    GCACACTGCT AACCCTAGCT GGACTCACTC TAGCCGGTTC GGTGATCGGC 
    TTGCTAGTCT CCATACCCCT CTTCCTCCTC TTCAGTCCGG TGATAGTCCC 
    GGCGGCTCTC ACTATTGGGC TTGCTGTGAC GGGAATCTTG GCTTCTGGTT 
    TGTTTGGGTT GACGGGTCTG AGCTCGGTCT CGTGGGTCCT CAACTACCTC 
    CGTGGGACGA GTGATACAGT GCCAGAGCAA TTGGACTACG CTAAACGGCG 
    TATGGCTGAT GCGGTAGGCT ATGCTGGTAT GAAGGGAAAA GAGATGGGTC 
    AGTATGTGCA AGATAAGGCT CATGAGGCTC GTGAGACTGA GTTCATGACT 
    GAGACCCATG AGCCGGGTAA GGCCAGGAGA GGCTCATAAG CTAATATAAA 
    TTGCGGGAGT CAGTTGGAAA CGCGATAAAT GTAGTTTTAC TTTTATGTCC 
    CAGTTTCTTT CCTCTTTTAA GAATATCTTT GTCTATATAT GTGTTCGTTC 
    GTTTTGTCTT GTCCAAATAA AAATCCTTGT TAGTGAAATA AGAAATGAAA 
    TAAATATGTT TTCTTT

    Gene models with high sequence identity

    1. AT3G27660.1 [+] show detail - oleosin 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Oleosin 0
    HMMPfam Oleosin 7e-49

    See the detailed result >

    AT3G27660.1

    Model type
    Protein coding
    Short Description
    oleosin 4
    Curator Summary
    Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798.
    Computational Description
    oleosin 4 (OLEO4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to freezing, lipid storage, seed germination, seed oilbody biogenesis; LOCATED IN: monolayer-surrounded lipid storage body, integral to membrane, membrane; EXPRESSED IN: hypocotyl, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: oleosin 2 (TAIR:AT5G40420.1); Has 520 Blast hits to 520 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 520; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR