F09817

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09817

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09817

Determination of introduced cDNA(s)

  • RAFL09-19-C22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-19-C22 - Resource: pda05490

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-19-C22 - full reading
    TGCAGGTTTT GAATTTGAAA ACGGAGTTAG AGGAAGCTCG TAATTCAAAT 
    GTAGAGCTTG AGTTGAATAA TAGGAAGCTT TCTCAGGATC TTGTTTCAGC
    TGAAGCTAAG ATCTCATCTC TTTCTTCTAA CGACAAGCCA GCTAAAGAAC
    ATCAAAACAG CAGATTCAAA GATATCCAGA GGTTAATAGC TAGCAAATTA
    GAGCAACCCA AGGTTAAGAA GGAGGTAGCA GTAGAGTCAT CAAGATTATC
    TCCACCATCA CCTTCTCCTT CAAGATTACC GCCAACACCG CCATTACCGA
    AGTTTTTGGT GTCTCCAGCT AGCAGTTTAG GTAAAAGAGA TGAAAATTCT
    TCACCCTTTG CACCTCCAAC ACCACCGCCT CCGCCGCCAC CACCACCACC
    TAGACCTCTT GCTAAAGCAG CTCGTGCTCA GAAGTCTCCT CCAGTTTCAC
    AGCTATTTCA GTTGTTGAAT AAGCAAGATA ATAGTAGAAA CCTTTCTCAG
    TCTGTTAATG GGAATAAGTC TCAAGTTAAC AGTGCTCACA ACAGTATAGT
    CGGAGAAATT CAAAACCGTT CTGCGCATCT CATCGCTATA AAAGCTGATA
    TAGAGACAAA AGGGGAGTTT ATCAATGATC TTATCCAGAA AGTTCTGACC
    ACTTGTTTTT CGGATATGGA AGATGTCATG AAATTTGTGG ATTGGCTTGA
    TAAAGAACTG GCAACTCTGG CTGATGAGCG TGCTGTGCTT AAGCATTTCA
    AGTGGCCTGA GAAGAAAGCC GATACCCTGC AAGAGGCTGC AGTTGAATAC
    CGTGAGCTAA AGAAACTGGA AAAAGAACTT TCTTCCTACT CTGATGATCC
    GAACATTCAC TACGGTGTTG CCCTGAAGAA AATGGCCAAC TTACTAGACA
    AGTCGGAGCA GAGGATAAGG AGGCTAGTCA GATTACGTGG CTCATCCATG
    CGTTCTTACC AGGACTTTAA GATCCCAGTC GAGTGGATGC TTGACTCGGG
    AATGATATGC AAGATCAAAA GAGCATCGAT CAAACTTGCG AAAACCTACA
    TGAATAGAGT AGCGAATGAG CTGCAATCAG CTCGTAACTT GGATAGAGAG
    TCTACTAAAG AAGCATTGCT TCTTCAAGGC GTCCGATTTG CTTACAGAAC
    GCACCAGTTT GCGGGAGGGC TCGATCCAGA GACATTGTGT GCATTAGAAG
    AGATTAAGCA ACGTGTTCCG AGTCATCTCC GGCTGGCACG GGGGAATATG
    GCCGGAAATC TGTCGTAGAA AAGTAATCAG AGAAATGTGA GGCATATGGG
    CTGTGGTTCT GGCTACAAAA TTCGTTATTT GTGTTAATAG TGTTTGGTGA
    GTCAGGTTGT GTCCCATTTA ATAATAATGT TATAATGTAT CTAAAATGTT
    CCTCCAGTGA ATTACTCAAT TAATTTTTGC GCC

    Gene models with high sequence identity

    1. AT1G48280.1 [+] show detail - hydroxyproline-rich glycoprotein family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT1G48280.1

    Model type
    Protein coding
    Short Description
    hydroxyproline-rich glycoprotein family protein
    Computational Description
    hydroxyproline-rich glycoprotein family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT3G25690.3); Has 10788 Blast hits to 7587 proteins in 614 species: Archae - 16; Bacteria - 992; Metazoa - 4057; Fungi - 1231; Plants - 2229; Viruses - 567; Other Eukaryotes - 1696 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR