F09828

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09828

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09828

Determination of introduced cDNA(s)

  • RAFL09-49-F17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-49-F17 - Resource: pda08425

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-49-F17 - full reading 
    AATTCAAACG GGAGATTTCG TTTTCCGATC ATCACCGATC AACTTCTTCG 
    CCGGAGAACA AATAAGTTTC AAAGCTTCTT TTGACGATTA AAGTAGAATA 
    AACAGAAATT GAATCCATGA AGAAGATAAA GAGAAACCTC AGAGAAGAAG 
    AAGAAGGAAG GTGATGAATG TTGAGATCGA TTTTTGATTT CAATCAACGT 
    TCAACGAAGA TGGTGATGAT TTCTCATAAG TTGGATTTGA TTTTGGTTTT 
    CATAATCGTA ATCGGAGGAT CTATTTTCCG ACGAGTTTCT GCTAATTTCA 
    CCGTACCTTG TAACGGAAGA TGCGGTGGAT TGACTCTGCC TTATCCTTTC 
    GGGTTTTCAA ACGGTTGTTC GATCCGATTC GATTGCTCTG CGGCGGAGAA 
    ACCGATGATC GGAGACTTTT CCGTTCAAAA CGCGACGGAA AACAGTATAT 
    TTGTCGGTCT CTCTCACAAT TGTACTCGGA AGATTGAAGA TATGAATCCG 
    CTTTTCGGCG AGAATTTCGC ACCAACGTCG GAGAACAGTT TCTTGATGGA 
    GAATTGTAAC CGTACCACCG ATGGTTGCTC TATCAAGCAG AAGTTTCTGG 
    AGAATGTGCT GAAACTCAAA AGTTGTGATG CTACTGGAAA CATAAGTTGT 
    TTTTCTTTAG ATAGTAATTC GAGTTCGAAG AACTCAGCTA AGTTTTTCAG 
    TATGAAGACA TTAAGGAACA GCTCGTGTAG TTTGTTGTTC TCGTCGATAG 
    CTTTCGAGTC TGTAGGTGTG AATGCGGGTA TAGCGTTAGA GTTTGAGCGA 
    GTTCGGTTAG GTTGGTGGCT TAAGGGAGGT TGCGAGAGCG GAACTTGCGC 
    GGCTAACACC GATTGTACAG ACGTTGAAAC TCCTCATGGA TATGCAGGAC 
    ACCGGTGCTC ATGTCTTGAC GGTTTCCACG GTGACGGATA CACCAACCCT 
    TGCCAGAGAG CACTACCGGA GTGCCGTGGT TCCAAGCTCG TCTGGAGACA 
    TTGTAGATCT AATCTTATTA CTATTGTAGG AGGAACTGTT GGTGGAGCGT 
    TTTTACTAGC TGCCTTGGCT TTTTTCTTCT TTTGTAAGCG GAGACGGTCT 
    ACTCCTTTGA GAAGTCATTT AAGCGCAAAG CGTCTTTTGT CTGAAGCTGC 
    AGGGAACTCG AGTGTCGCCT TTTTCCCTTA CAAGGAAATC GAGAAAGCGA 
    CAGATGGTTT CTCTGAAAAG CAGAAGTTAG GAATAGGTGC ATATGGTACG 
    GTCTATAGAG GAAAGCTCCA AAATGATGAA TGGGTTGCTA TCAAAAGACT 
    TAGACATAGA GATTCAGAAA GTCTTGACCA AGTCATGAAT GAGATCAAGC 
    TTCTTTCCTC TGTGAGTCAC CCGAATCTTG TCCGTCTCTT AGGATGTTGT 
    ATAGAACAAG GCGATCCAGT TCTCGTTTAT GAGTACATGC CGAATGGAAC 
    TCTATCTGAA CATCTACAAA GAGATAGAGG GAGTGGTCTT CCATGGACCT 
    TGCGTCTCAC TGTTGCTACT CAAACAGCTA AAGCAATCGC GTATCTCCAC 
    TCTTCAATGA ACCCACCGAT CTATCACCGT GACATCAAAT CTACCAATAT 
    CCTTCTTGAT TATGATTTCA ACTCCAAAGT TGCGGATTTC GGACTCTCTA 
    GACTGGGAAT GACGGAATCT TCTCACATAT CAACGGCTCC TCAAGGGACT 
    CCTGGTTATC TTGACCCGCA GTACCATCAA TGCTTTCATC TCTCTGATAA 
    GAGCGACGTC TACAGCTTTG GAGTCGTCCT TGCCGAGATT ATAACGGGAT 
    TGAAAGTCGT TGATTTCACA CGTCCACATA CCGAAATCAA CCTAGCGGCT 
    CTTGCTGTTG ACAAAATCGG GTCAGGTTGT ATCGATGAGA TAATAGACCC 
    GATTCTTGAC TTGGATCTCG ACGCATGGAC TCTCTCATCC ATACACACGG 
    TGGCTGAGCT TGCATTTCGA TGCTTAGCCT TCCACAGTGA CATGAGACCG 
    ACAATGACCG AAGTAGCGGA CGAGCTTGAA CAGATAAGAC TCAGTGGTTG 
    GATTCCAAGC ATGAGCTTGG ATTCACCAGC CGGTTCTCTC CGTTCATCTG 
    ATCGAGGAAG CGAAAGATCA GTTAAACAAT CATCAATAGG AAGCAGAAGA 
    GTCGTTATCC CTCAGAAACA ACCTGATTGC CTCGCATCCG TCGAAGAGAT 
    TAGCGATAGC TCACCCATCT CAGTTCAAGA TCCTTGGTTA AGTGCACAAA 
    GCTCACCGTC TACAAATACA TTGCTCGGTA ACATTCCAAG ATGATAGTAT 
    GATCTCAAAA CACGATTACC ACTTTCTTGT TTATATAAGT CCCTCTTTTG 
    TGTAGCTTTC ACAATCATTC AGTGTTTATA ATGCTAAGTA GAGAGATTAA 
    CAATGGTGAA AACAGGTTTA TACATGAGTT ATAATGTAAA CGATCTTGAA 
    ACAAGATCTT TCAACC

    Gene models with high sequence identity

    1. AT2G23450.2 [+] show detail - Protein kinase superfamily protein
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 7.8e-78
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMSmart Serine/threonine-protein kinase domain 1.6e-39
    HMMSmart Tyrosine-protein kinase, catalytic domain 3.7e-25
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3e-157
    ProfileScan Protein kinase, catalytic domain 37.333
    Gene3D no description 1.4e-23
    Gene3D no description 1.9e-46
    HMMPfam Serine/threonine-protein kinase-like domain 5.4e-48

    See the detailed result >

    AT2G23450.2

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), EGF-like (InterPro:IPR006210), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G66790.1); Has 113981 Blast hits to 112485 proteins in 3193 species: Archae - 103; Bacteria - 12981; Metazoa - 41291; Fungi - 9532; Plants - 32683; Viruses - 360; Other Eukaryotes - 17031 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR