F09833

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09833

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F09833

Determination of introduced cDNA(s)

  • RAFL05-18-B19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-B19 - Resource: pda02750

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-18-B19 - full reading 
    GTCTCGAGTC GCTGAGATCC ATCAGTAAAA GGTCTGCAAA ATGGTTGCTC 
    AGGGATTCAC TGTGGATCTT AAAAAGCCCC TTGTATTTCA GGTTGGTCAT 
    CTTGGAGAAG ATTATGAGGA ATGGGTTCAC CAACCTATCG CGACCAAGGA 
    AGGCCCTCGG TTTTTTCAGA GTGACTTTTG GGAGTTCTTG ACACTTACAG 
    TTTGGTGGGC AGTTCCTGTC ATTTGGTTGC CAGTTGTAGT CTGGTGCATA 
    TCAAGGTCAG TAAGTATGGG ATGTTCACTT CCAGAAATCG TCCCAATTGT 
    TGTCATGGGA ATATTCATCT GGACATTTTT TGAATACGTT CTTCACCGGT 
    TCGTTTTCCA CATAAAAACG AAGAGTTACT GGGGAAACAC TGCACACTAT 
    CTTATTCACG GATGCCATCA TAAGCACCCG ATGGACCACC TTCGGCTCGT 
    CTTTCCTCCT ACTGCAACAG CGATTTTATG CTTTCCGTTC TGGAACATTG 
    CGAAGGCTAT CTCAACTCCT TCAACCGCAC CTGCATTGTT TGGTGGAGGC 
    ATGCTCGGAT ATGTGATGTA CGATGTCACT CATTATTACC TTCACCATGC 
    CCAACCTACT AGACCAGTGA CCAAAAATCT CAAGAAGTAC CATTTGAATC 
    ATCACTTCAG GATTCAGGAC AAAGGATTTG GTATAACTTC GTCGTTATGG 
    GACATAGTCT TTGGGACACT TCCCACCACA AAAGCCCCCA GAAAAGAGCA 
    ATAGTAGTAA AAGGCAAAAA CTAAAAAGAT GTTTGTAATA CATTTAATTT 
    AATCTTAAGT TATTAATCAT CCTTCTG

    Gene models with high sequence identity

    1. AT2G34770.1 [+] show detail - fatty acid hydroxylase 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther FATTY ACID HYDROXYLASE 7.4e-110
    HMMPfam Fatty acid hydroxylase 1e-10

    See the detailed result >

    AT2G34770.1

    Model type
    Protein coding
    Short Description
    fatty acid hydroxylase 1
    Curator Summary
    encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.
    Computational Description
    fatty acid hydroxylase 1 (FAH1); FUNCTIONS IN: fatty acid alpha-hydroxylase activity, catalytic activity; INVOLVED IN: very long-chain fatty acid metabolic process, negative regulation of programmed cell death; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: fatty acid hydroxylase 2 (TAIR:AT4G20870.1); Has 784 Blast hits to 784 proteins in 354 species: Archae - 0; Bacteria - 388; Metazoa - 105; Fungi - 140; Plants - 78; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR