F09842

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09842

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09842

Determination of introduced cDNA(s)

  • RAFL09-10-N02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-10-N02 - Resource: pda05389

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-10-N02 - full reading 
    AGTGGAGTGA AAAAACAAAT CCTAAGCAGT CCTAACCGAT CCCCGAAGCT 
    AAAGATTCTT CACCTTCCCA AATAAAGCAA AACCTAGATC CGACATTGAA 
    GGAAAAACCT TTTAGATCCA TCTCTGAAAA AAAACCAACC ATGAAGAGAG 
    ATCATCATCA TCATCATCAT CAAGATAAGA AGACTATGAT GATGAATGAA 
    GAAGACGACG GTAACGGCAT GGATGAGCTT CTAGCTGTTC TTGGTTACAA 
    GGTTAGGTCA TCCGAAATGG CTGATGTTGC TCAGAAACTC GAGCAGCTTG 
    AAGTTATGAT GTCTAATGTT CAAGAAGACG ATCTTTCTCA ACTCGCTACT 
    GAGACTGTTC ACTATAATCC GGCGGAGCTT TACACGTGGC TTGATTCTAT 
    GCTCACCGAC CTTAATCCTC CGTCGTCTAA CGCCGAGTAC GATCTTAAAG 
    CTATTCCCGG TGACGCGATT CTCAATCAGT TCGCTATCGA TTCGGCTTCT 
    TCGTCTAACC AAGGCGGCGG AGGAGATACG TATACTACAA ACAAGCGGTT 
    GAAATGCTCA AACGGCGTCG TGGAAACCAC TACAGCGACG GCTGAGTCAA 
    CTCGGCATGT TGTCCTGGTT GACTCGCAGG AGAACGGTGT GCGTCTCGTT 
    CACGCGCTTT TGGCTTGCGC TGAAGCTGTT CAGAAAGAGA ATCTGACTGT 
    AGCGGAAGCT CTGGTGAAGC AAATCGGATT CTTAGCCGTT TCTCAAATCG 
    GAGCGATGAG AAAAGTCGCT ACTTACTTCG CCGAAGCTCT CGCGCGGCGG 
    ATTTACCGTC TCTCTCCGTC GCAGAGTCCA ATCGACCACT CTCTCTCCGA 
    TACTCTTCAG ATGCACTTCT ACGAGACTTG TCCTTATCTC AAGTTCGCTC 
    ACTTCACGGC GAATCAAGCG ATTCTCGAAG CTTTTCAAGG GAAGAAAAGA 
    GTTCATGTCA TTGATTTCTC TATGAGTCAA GGTCTTCAAT GGCCGGCGCT 
    TATGCAGGCT CTTGCGCTTC GACCTGGTGG TCCTCCTGTT TTCCGGTTAA 
    CCGGAATTGG TCCACCGGCA CCGGATAATT TCGATTATCT TCATGAAGTT 
    GGGTGTAAGC TGGCTCATTT AGCTGAGGCG ATTCACGTTG AGTTTGAGTA 
    CAGAGGATTT GTGGCTAACA CTTTAGCTGA TCTTGATGCT TCGATGCTTG 
    AGCTTAGACC AAGTGAGATT GAATCTGTTG CGGTTAACTC TGTTTTCGAG 
    CTTCACAAGC TCTTGGGACG ACCTGGTGCG ATCGATAAGG TTCTTGGTGT 
    GGTGAATCAG ATTAAACCGG AGATTTTCAC TGTGGTTGAG CAGGAATCGA 
    ACCATAATAG TCCGATTTTC TTAGATCGGT TTACTGAGTC GTTGCATTAT 
    TACTCGACGT TGTTTGACTC GTTGGAAGGT GTACCGAGTG GTCAAGACAA 
    GGTCATGTCG GAGGTTTACT TGGGTAAACA GATCTGCAAC GTTGTGGCTT 
    GTGATGGACC TGACCGAGTT GAGCGTCATG AAACGTTGAG TCAGTGGAGG 
    AACCGGTTCG GGTCTGCTGG GTTTGCGGCT GCACATATTG GTTCGAATGC 
    GTTTAAGCAA GCGAGTATGC TTTTGGCTCT GTTCAACGGC GGTGAGGGTT 
    ATCGGGTGGA GGAGAGTGAC GGCTGTCTCA TGTTGGGTTG GCACACACGA 
    CCGCTCATAG CCACCTCGGC TTGGAAACTC TCCACCAATT AGATGGTGGC 
    TCAATGAATT GATCTGTTGA ACCGGTTATG ATGATAGATT TCCGACCGAA 
    GCCAAACTAA ATCCTACTGT TTTTCCCTTT GTCACTTGTT AAGATCTTAT 
    CTTTCATTAT ATTAGGTAAT TGAAAAATTT TAATCTCGCT TTGGAGAGTT 
    TTTTTTTTTT GCATGTGACA TTGGAGGGTA AATTGGATAG GCAGAAATAG 
    AAGTATGTGT TACCAAGTAT GTGCAATTGG TTGAAATAAA ATCATCTTGA 
    GTGTCACCAT CTATAAAATT CATTGTAATG ACTAATGAGC CTGATTAAAC 
    TGTCTCTTAT GATAATGTGC TGATTCTCAT GAAAAAAAAA AAAAAAG

    Gene models with high sequence identity

    1. AT1G14920.1 [+] show detail - GRAS family transcription factor family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Transcription factor GRAS 64.4
    HMMPfam Transcription factor GRAS 6.8e-133
    HMMPfam Transcriptional factor DELLA, N-terminal 1.1e-34
    Coil coiled-coil 0

    See the detailed result >

    AT1G14920.1

    Model type
    Protein coding
    Short Description
    GRAS family transcription factor family protein
    Curator Summary
    Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. GAI may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA.
    Computational Description
    GIBBERELLIC ACID INSENSITIVE (GAI); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT2G01570.1); Has 2718 Blast hits to 2657 proteins in 311 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2714; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR