F09846

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09846

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09846

Determination of introduced cDNA(s)

  • RAFL09-32-L06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-32-L06 - Resource: pda05948

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-32-L06 - full reading
    AGGGCAGAGT GACTGATACC AAAGGAGAAA CAACAAAGAG ACGAACTGAA 
    GAAAAACCTC TCGGAAGAAG ATGAGCAATT GGAAAACTCT TCTCCTTCGC
    ATCGGCGAAA AGGGACCTGA GTACGGCACT TCCTCCGACT ACAAAGACCA
    CATCGAGACT TGTTTCGGTG TCATTCGTAG AGAAATCGAG CGTTCTGGAG
    ATCAAGTTTT GCCTTTTCTA CTACAATGTG CTGAACAATT GCCTCATAAG
    ATTCCTTTGT ATGGGACTTT GATTGGTTTG TTGAACTTGG AGAATGAAGA
    TTTTGTCCAG AAGCTAGTAG AAAGTGTCCA CGCTAATTTC CAGGTCGCTT
    TAGATTCTGG CAACTGCAAC AGTATCCGTA TATTGCTTCG CTTTATGACT
    TCCCTGTTGT GCAGTAAGGT TATTCAACCT GCTTCTTTGA TTGTCGTCTT
    CGAAACATTG CTATCATCTG CTGCCACTAC TGTGGATGAA GAGAAAGGAA
    ATCCATCATG GCAGCCACAA GCTGACTTTT ACGTTATATG CATCTTGTCC
    AGCCTCCCGT GGGGAGGATC AGAACTCGCT GAGCAAGTTC CTGATGAGAT
    TGAAAGAGTG TTAGTTGGGA TACAAGCTTA TTTGAGCATC CGAAAGAATT
    CTTCCACCTC TGGGTTAAAC TTTTTTCACA ACGGAGAATT TGAAAGCAGC
    CTTGCAGAGA AGGATTTCGT GGAGGATCTA TTGGATCGAA TTCAGTCTCT
    GGCTTCCAAT GGATGGAAAC TTGAAAGCGT ACCTAGGCCT CATCTCTCGT
    TTGAAGCTCA ACTCGTTGCT GGAAAGTTTC ATGAGCTACG TCCCATTAAA
    TGTATGGAAC AACCGAGTCC ACCTTCTGAT CATTCGAGGG CATACAGTGG
    CAAGCAAAAG CATGATGCAT TGACGAGATA TCCCCAGAGA ATTCGTAGGT
    TGAATATATT TCCAGCTAAT AAAATGGAGG ATGTACAACC AATTGATCGT
    TTTGTCGTGG AGGAGTATTT GCTGGATGTG CTCTTCTATT TGAATGGATG
    TCGGAAGGAG TGTGCATCCT ACATGGCTAA TCTTCCTGTT ACATTTCGGT
    ACGAGTATCT TATGGCAGAG ACACTATTTT CTCAGATACT GCTGCTACCC
    CAGCCACCAT TCAAGACTCT TTATTATACA CTCGTGATTA TGGATCTTTG
    TAAGGCTCTT CCGGGTGCCT TTCCTGCTGT TGTTGCTGGC GCTGTTCGTG
    CACTATTTGA GAAAATATCC GACTTAGACA TGGAATCCAG GACGCGTCTT
    ATCCTCTGGT TTTCTCACCA CTTATCCAAC TTCCAATTCA TCTGGCCGTG
    GGAAGAGTGG GCTTTTGTGT TGGATCTTCC CAAGTGGGCC CCTAAGCGTG
    TATTTGTTCA GGAGATTTTG CAAAGAGAAG TACGCTTGTC TTACTGGGAT
    AAAATTAAGC AGAGCATTGA GAATGCGACT GCCCTAGAAG AATTACTTCC
    TCCAAAAGCT GGTCCGAATT TTATGTATTC CTTGGAAGAA GGTAAAGAGA
    AAACAGAAGA ACAGCAATTG TCAGCCGAAT TGAGCAGGAA GGTCAAGGAA
    AAACAAACCG CACGTGACAT GATAGTGTGG ATTGAAGAAA CGATATATCC
    AGTTCATGGT TTTGAAGTTA CTCTTACAAT AGTTGTACAG ACCTTACTTG
    ACATCGGATC AAAAAGTTTC ACTCATTTGG TCACTGTCCT GGAGCGATAT
    GGCCAAGTAT TTTCAAAGCT TTGTCCTGAT AACGATAAGC AGGTGATGCT
    ATTATCTCAA GTGAGTACAT ACTGGAAAAA CAATGTACAA ATGACGGCGG
    TGGCAATTGA TAGGATGATG GGTTATAGAC TAGTATCTAA TCAGGCAATT
    GTTAGATGGG TGTTCTCTCC AGAAAATGTT GATCAGTTTC ATATGTCTGA
    TCAGCCATGG GAGATACTTG GCAATGCTCT TAACAAGACT TATAACCGTA
    TCTCTGATTT GAGGAAAGAT ATATCAAACA TTACGAAAAA TGTTTTGGTT
    GCTGAGAAAG CTTCAGCCAA TGCACGAGTA GAGTTGGAGG CTGCTGAGAG
    CAAACTTTCC CTAGTGGAAG GTGAACCCGT TCTTGGTGAG AATCCAGCGA
    AGATGAAGCG TTTAAAATCA ACAGTGGAGA AGACAGGGGA AGCGGAGTTA
    TCTCTTCGGG AGTCCCTAGA GGCAAAAGAG GCTCTTCTTA ACAGAGCTCT
    CTCTGAGACC GAGGTTTTAC TGCTCTTGCT GTTCCAAAGT TTCTTAGGTG
    TACTGAAGGA ACGGCTCCCA GATCCAACTA AAGTGAGATC AGTGCAGGAT
    CTAAAATCTA TAGGTGCTGA AGATGACAAG CCATCTGCGA TGGACGTGGA
    CAGCGAGAAT GGAAACCCAA AGAAGAGTTG CGAAGTCGGT GAGAGAGAAC
    AGTGGTGCTT ATCAACACTT GGCTATCTCA CGGCATTTAC AAGGCAATAT
    GCGAGCGAGA TATGGCCTCA CATGGAGAAG TTGGAGTCAG AAGTGTTCTC
    GGGTGAAGAT GTGCATCCTC TCTTTCTCCA AGCCATATCT TCTGCACTTC
    AATTCCCATT ACATTAATCT TCCTCTTTCA ATCTCAATCA AACCTGTCTC
    TTTTGTTTTT TGTTATGAGA TTCTGATTCT GACATCAAGT TATTAGGAAA
    TTGAAAAGAG TCAAAAAACA AGAGTTTAAA CTTCT

    Gene models with high sequence identity

    1. AT2G13540.1 [+] show detail - ARM repeat superfamily protein
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart MIF4G-like, type 3 3.6e-32
    HMMPfam MIF4G-like, type 2 1.6e-55
    HMMPfam MIF4G-like, type 1 2.3e-40
    HMMPfam MIF4G-like, type 3 1.7e-31
    Gene3D MIF4-like, type 1/2/3 7e-81
    Gene3D MIF4-like, type 1/2/3 9.9e-57
    Gene3D MIF4-like, type 1/2/3 3.2e-70
    superfamily Armadillo-type fold 5.6e-83
    superfamily Armadillo-type fold 1.7e-79
    superfamily Armadillo-type fold 1.8e-64
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther CAP BINDING PROTEIN 0
    HMMPanther CAP BINDING PROTEIN 0

    See the detailed result >

    AT2G13540.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Curator Summary
    Encodes a nuclear cap-binding protein that forms a heterodimeric complex with CBP20 and is involved in ABA signaling and flowering. Mutants are early flowering and exhibit hypersensitive response to ABA in germination inhibition.Loss of ABH1 function results in abnormal processing of mRNAs for several important floral regulators (FLC, CO, FLM). Analysis of loss of function mutations suggests a role in pri-miRNA processing and mRNA splicing. Note that two different mutant alleles were given the same name abh1-7 (Kuhn et al 2007; Kim et al 2008). To avoid confusion, abh1-7 described in Kim et al (2008) has been renamed abh1-107 (other names: ensalada-1, ens-1).
    Computational Description
    ABA HYPERSENSITIVE 1 (ABH1); CONTAINS InterPro DOMAIN/s: MIF4G-like, type 2 (InterPro:IPR015174), MIF4G-like, type 1 (InterPro:IPR015172), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); Has 514 Blast hits to 510 proteins in 229 species: Archae - 0; Bacteria - 96; Metazoa - 188; Fungi - 131; Plants - 55; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR