F09921

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09921

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09921

Determination of introduced cDNA(s)

  • RAFL06-09-F12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-09-F12 - Resource: pda02933

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-09-F12 - full reading 
    TGATGGCCGC ACCTGCAAAC TTCTCGTCTC AATGTTCCGA TTATACCCTA 
    ATTGCTCTCT GCCTTCTCAC AGACCTCTCG TTTTCCTTCC TCGTCTTCCT 
    TCTCGCTCCC TCCGTTGCCG CGCCGCCGCT GATATTCCCC TTGGTGACGG 
    AATCCGATTA CCTCGAGAAG CGGATTCAAC CTCTGACACG GCGAGGTCTC 
    GGGATGTTTC CGTCGCCGCC GGTGGGAATG GTGAAGGTGC TAAGTGGAGG 
    AAGAGGAGGT TGCTCTGGTC GAAAAGTGGA GAGAGTTACT TGGTAGATGA 
    TGGCGACGCG CTTCCTCTTC CTATGACTTA TCCTGATACA TCCCCTGTGT 
    CGCCGGATGT GATTGACCGG AGGTTGCAAT GTGATCCTGT AGTCGAGGAT 
    TGCCGGGAAG TGGTTTATGA ATGGACTGGA AAGTGTAGAA GTTGCCAAGG 
    ATCTGGAACT GTCAGCTATT ACAAGAAAAG GGGTAAAGAG GTTATATGCA 
    AATGCATACC CTGCCAAGGG ATAGGATATG TGCAGAAGAT AACATCTCGG 
    ACGGACATTG AAGTGATGGA AGATTTGGAT AATGAACCAT CTTGACCTTG 
    AATATGGCCC ATTTTTGCAT GTAAGCTTGG GTTCGTTATT GAAGTGTATC 
    CGTTGCACGT ACAAAACTAT AACCAGAAGA GAGATAAGTG CTTCTTTGGG 
    ATGTTTGGCC CAAACAAGCT GATCGGAGGT ATAGACAAAA ACTACTGATT 
    CTTGCTCAGA TAATGGCTTC TTCTTTCACC AATAGTCCCC ATATAGGCAA 
    TTTCTGTTTT ATATGTATCA GACCTCGAGA CACCACGAAC TGCAGGAATT 
    GTTTGTGTTT TTAGGCTGTT TCAGTCTGAC TTATGTACAT CAAGAGAAAA 
    GATAGCTGTA ACACGATCCA TTTAATTATC TTTGTGTGCT TTACCTCTTG 
    GTTCAAGTT

    Gene models with high sequence identity

    1. AT3G19220.1 [+] show detail - protein disulfide isomerases
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G19220.1

    Model type
    Protein coding
    Short Description
    protein disulfide isomerases
    Curator Summary
    Encodes a zinc finger protein that is similar to a subgroup of DnaJ and is involved in cotyledon chloroplast biogenesis. Cyo1 is localized to the thylakoid membrane and has protein disulfide isomerase activity in vivo.Cyo1 is more highly expressed in light grown seedlings. Loss of function mutants have albino cotyledons and abnormal plastids.
    Computational Description
    SNOWY COTYLEDON 2 (SCO2); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR