F09932

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09932

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09932

Determination of introduced cDNA(s)

  • RAFL06-10-F19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-10-F19 - Resource: pda02985

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-10-F19 - full reading 
    GCAACGTAGG TTCTGGTGAA TGATCCTAAT CCGTTTAGCT TTAAAAAAAA 
    ATAAGAAGAC ATATTTATCA ACTTGATCAA CTTGAGCAAG TTGCAGCAGA 
    TATTTTCCTC GGCCAAGATC TAGAGTTTTG AGAATGGCGA TGGTATCAGG 
    AAGACGATCT ACTCTAAACC CCGACGCACC TCTTTTTATT CCGGCAGCTG 
    TACGACAAGT GGAAGATTTC TCACCGGAGT GGTGGCAATT GGTGACAACT 
    TCGACTTGGT ACCCTGATTA CTGGATCAGT CAGCAGCAGC AAGGCGCGGA 
    TGGTTTCTAT GACAACGGAG AGAATGAGAA TGGTGGAGGT CATATCGATG 
    TAGCTGATCT TCTTCCAGAA TCATTTGATT TTGATGATAT GGAAGATTTC 
    TTTGACACTG ATGCTGCTGA GTTTGATCAA GGATTCGATG GAAGAATGTA 
    TTACCAAGCA CCTTCCGAAT TTGGCTTTGG AAAGAATGGT GAGATGGTTA 
    AGAAATCAAG TGGAAACAGG AGCCCGAGAT CGATTGTGGA ACCAGCTAAG 
    TATGCGGAAA AGCCAGCGAA ATGGGGAAAC CAGAGGGTTG CTGCTGCTCC 
    GAGAAACATC CACCAGCCTC GCTGAAGAGA TATGTTGTTA ACTAGTCAGA 
    GAAGTCAGAG CAGTTCGGTC TGTGTATCTT TAGCCACCAC TGTACCTTTG 
    TAATTTTTAG TATTTGCTTC CACAACAAAA ATCTGTAACT TTGTATCTTT 
    ATGATGTTCA TTCTCAAACT TGCTATCACA AAAATGTAAA AACATAAAAA 
    AAAAAAAATG TAAACTTTGA AGAGAAATGA GAACTAGAGT TTATTTCC

    Gene models with high sequence identity

    1. AT2G41430.2 [+] show detail - dehydration-induced protein (ERD15)
      E-value: 0; Score: 99.76

     

    InterPro Scan Digest

    See the detailed result >

    AT2G41430.2

    Model type
    Protein coding
    Short Description
    dehydration-induced protein (ERD15)
    Curator Summary
    Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.
    Computational Description
    EARLY RESPONSIVE TO DEHYDRATION 15 (ERD15); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14270.2); Has 169 Blast hits to 169 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 169; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR