F09934

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09934

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09934

Determination of introduced cDNA(s)

  • RAFL09-91-P07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-91-P07 - Resource: pda09023

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-91-P07 - full reading 
    AAGAGGCGTG ACTTTAAAAA TCTGTAAAAA AGCAAATCCG AAGAAAGAGA 
    GAGAGAGAAG GTGATTTTGA AATTTCAGAT AACGCAGAAT TTTTTTATTC 
    TCGCCGGAGT TTTCTCCTCC CACCGTCTCT GATTCTCGTC GCCGCCGTAC 
    ACAGTTGTTG TTCTCTGCCG TTTCTGCAAG ATGATTGGAT CGTTTCTTAC 
    AAGAGGATTG GTGATGGTGT TGGGCTATGC TTACCCTGCG TATGAATGTT 
    ACAAGACTGT TGAAAAGAAT AGGCCTGAAA TCGAGCAACT TCGCTTTTGG 
    TGTCAGTACT GGATATTGGT TGCTTGCTTG ACAGTTTTTG AGAGAGTTGG 
    TGATGCGTTT GTTTCATGGG TTCCGATGTA CAGTGAAGCT AAGTTGGCAT 
    TCTTCATATA CCTGTGGTAT CCTAAAACCA GGGGTACTAC ATATGTCTAC 
    GAGTCCTTCT TTAGGCCATA TCTCTCACAG CATGAGAATG ACATAGACCA 
    TAGTTTGCTC GAGCTAAGGA CTAGAGCAGG AGATATGGCT GTTATATACT 
    GGCAACGAGT TGCAAGTTAT GGTCAGACCA GAATCCTTGA GATTTTGCAG 
    TATGTTGCTG CACAATCAAC TCCAAGACCG CAGCCACCTC AGAAACGTGG 
    AGGTAGAGCT AATCAAGCTC CTGCGAAGCC TAAGAAAGCC CCTGTTCCCC 
    CAATCAGAAC CTGAAGAAGT ATCATTGTCC TCGTCTTCTA GCTCATCTTC 
    AAGTGAAAAT GAAGGTAATG AGCCAACCCG TAAAGTATCA GGCCCGTCAA 
    GACCTAGACC AACAGTGACA TCTGTACCAG CTGCAGATCC CAAAAACGCG 
    GGTACCACTC AGATAGCACA GAAATCAGTA GCTTCCCCAA TTGTGAACCC 
    ACCACAGTCA ACCACCCAAG TGGAACCAAT GCAGATAGAA GAAGTGGAAG 
    GAGAGGCAGA ATCAGGGAAT GAAAATCCCA ACCCGGAAGG TCCAAAGGAG 
    ACAGTGATGG AGGAGACAAT CAGGATGACT CGTGGGAGGT TGAGGAAGAC 
    GCGTTCGGAA GAAAGCCGTT GAAAGAAGAA GAAGAAGCTC AATCCAAAAA 
    ATTGTTACTT ACTTGCATAA CAGTGGTCTC TCTTCTCTCT TACTCTATGT 
    TTCCTGCTTC TAGAATTACG TTGACAGGAA CTAACAACTA GTGGGAATGG 
    TTGTATGAAA AGTTAATCTG TTGGTTTTGT TCTAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT5G42560.1 [+] show detail - Abscisic acid-responsive (TB2/DP1, HVA22) family protein
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam TB2/DP1/HVA22 related protein 7.5e-32
    HMMPanther HVA22-LIKE PROTEIN 1.4e-122
    HMMPanther TB2/DP1/HVA22 related protein 1.4e-122

    See the detailed result >

    AT5G42560.1

    Model type
    Protein coding
    Short Description
    Abscisic acid-responsive (TB2/DP1, HVA22) family protein
    Computational Description
    Abscisic acid-responsive (TB2/DP1, HVA22) family protein; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR