F09949

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09949

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09949

Determination of introduced cDNA(s)

RAFL09-66-J21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-66-J21 - Resource: pda08646

full reading [+] show sequence

AGCCGAGAAA CAACGCAAAC TCCGATTGAG AGGTGTTTGC ATGATTCCTG 
AGCTTGTCTG TGTCAATAGT GAGGCACTAC ATCGAGGAAT AAGAAAGAAG 
ATCTAAGGAG CTAAAGCTAT TATGTCAACG AACACTGAAT CTTCTTCTTA 
TTCTTCTCTT CCTAGTCAAA GGCTTTTGGG TAAAGTGGCA TTGATCACTG 
GAGGAGCCAC AGGGATAGGT GAGAGCATTG TTCGTCTGTT CCACAAGCAC 
GGTGCCAAAG TCTGCATTGT TGATCTGCAA GATGATCTCG GAGGTGAGGT 
GTGTAAAAGT CTGCTTCGTG GTGAGTCCAA GGAGACGGCT TTTTTCATCC 
ATGGCGATGT TAGAGTGGAA GATGACATTA GCAATGCGGT TGACTTTGCA 
GTCAAAAATT TTGGGACGCT TGATATACTT ATCAACAATG CAGGATTATG 
TGGAGCACCG TGCCCTGATA TTCGTAATTA TAGTTTGAGT GAGTTCGAGA 
TGACCTTTGA TGTGAATGTG AAAGGAGCTT TTCTAAGCAT GAAACATGCA 
GCTCGTGTAA TGATACCGGA GAAGAAAGGG TCGATAGTTT CCTTATGTAG 
TGTGGGAGGT GTTGTGGGAG GCGTTGGTCC ACATTCTTAT GTTGGTTCCA 
AGCATGCTGT TCTAGGCTTG ACTAGGAGTG TTGCAGCGGA GCTTGGACAG 
CACGGGATAC GTGTGAACTG TGTTTCGCCT TACGCGGTTG CAACTAAACT 
CGCTTTGGCT CATTTGCCGG AGGAAGAAAG AACGGAGGAT GCATTTGTTG 
GTTTCAGGAA TTTTGCTGCT GCAAACGCGA ATCTAAAAGG GGTGGAACTG 
ACGGTTGATG ATGTAGCGAA CGCTGTTCTG TTTTTGGCTA GCGATGACTC 
GCGGTACATA AGCGGAGATA ATTTGATGAT TGATGGAGGA TTCACTTGCA 
CTAACCACTC CTTTAAAGTC TTCAGATGAT GCATTTTGCT AAAGAATGTT 
GTTTAATGTT TATTGTCCGC CAATTTATCA TGTCTATCAA ATAATTTAAC 
TGTGGAGCTT ATTGTGGTTT TAATTGTTAC TTTTAGCATT GTAGAAATGT 
TTGATGTTAA CTACATTTCT TACTGGTAGA CATTGAACAA AATCAGATTC 
TCATAATGAT TAAAAAGATT GAGTAG

Gene models with high sequence identity

AT1G52340.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	NAD(P)-binding domain	6.9e-71
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-37
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-37
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-37
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-37
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-37
FPrintScan	Glucose/ribitol dehydrogenase	2.3e-37
FPrintScan	Short-chain dehydrogenase/reductase SDR	0.0000000000042
FPrintScan	Short-chain dehydrogenase/reductase SDR	0.0000000000042
FPrintScan	Short-chain dehydrogenase/reductase SDR	0.0000000000042
Gene3D	NAD(P)-binding domain	4.1e-67
HMMPanther	SHORT CHAIN ALCOHOL DEHYDROGENASE	3.6e-150
HMMPanther	Short-chain dehydrogenase/reductase SDR	3.6e-150
HMMPfam	Short-chain dehydrogenase/reductase SDR	7.7e-27

See the detailed result >

AT1G52340.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary: Encodes a cytosolic short-chain dehydrogenase/reductase involved in the conversion of xanthoxin to ABA-aldehyde during ABA biosynthesis. Mutants are insensitive to sucrose and glucose.
Computational Description: ABA DEFICIENT 2 (ABA2); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G51680.1); Has 120353 Blast hits to 120130 proteins in 3578 species: Archae - 983; Bacteria - 78428; Metazoa - 5777; Fungi - 6239; Plants - 2770; Viruses - 5; Other Eukaryotes - 26151 (source: NCBI BLink).
Link: InterPro Scan - TAIR