F10001

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small)
	rosette leaf (PO:0000014)	increased size (PATO:0000586) (Rosette leaf::Shape::large) epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10001

Determination of introduced cDNA(s)

RAFL05-16-O12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-O12 - Resource: pda02702

full reading [+] show sequence

AGCAAACCGA AGTGGGAACG AAACCCCATG CTCCAAGTCC AATTAAATAA 
CATATGTCCA CAGAAATGTT TTCAAAATTC GAATAAGCCA CAGCAACGTG 
TCTTGTTCAT ATATCCACTA TAACCCAAAG CTGCTTCAAT GGTCGGATAT 
GGACACGTGT CAGTTAATCA GACCATCTCC AAGAAAAAAT ATCCCAAATC 
TTTCTTCCCT ATTCAGTCCC CCAATCAACA ATCCTCTTCA CATTTCTATT 
TTCTCCTCCG AGGTCGTCTC TCGACCAAAC CACAAAAACC AGAACAAAAA 
TAACTAAAAA ACAATCAGAT CTGAGATCGA ACAAAACAAC ATGAACACGT 
TAATCCCATC GGAGAAAAGA TGGATCATCA CCGGCGTTTT ACTAGCCGGT 
TTAGTTGGCG GTGCTTTGCT TTTCACAAGC TTCATACGAG CCGCTGACGA 
AACGCTCTTC CTCTGTTCCA CAGCAAGCGC CAAAAGCAGA GCGGTGGCTG 
CGGCAGCTGA TTACGAAGCG ACTCCGATTC AGCTTCAAGC GATCGTCCAC 
TACGCGACAT CTAACGTTGT CCCACAACAG AATCTTGCTG AGATCTCGAT 
CTCTTTCAAC ATCTTGAAAA AGCTAGCTCC GGCTAACTTT CTCGTGTTCG 
GTCTCGGTCG TGACTCGCTC ATGTGGGCTT CTTTAAATCC ACGTGGCAAA 
ACCTTGTTCT TGGAAGAAGA TCTTGAATGG TTTCAGAAAG TGACCAAAGA 
CTCTCCTTTC TTACGTGCGC ATCACGTGCG TTACAGGACG CAGCTTCAAC 
AAGCCGATTC GCTTCTACGT TCGTACAAAA CGGAGCCTAA GTGTTTTCCG 
GCGAAATCTT ATCTCCGGGG AAACGAGAAG TGTAAGCTAG CTCTCACGGG 
ACTGCCCGAT GAGTTCTACG ATACAGAGTG GGATCTGCTG ATGGTCGATG 
CTCCTAAAGG TTACTTCGCA GAAGCTCCGG GAAGAATGGC GGCGATTTTC 
TCGGCGGCTG TTATGGCTAG GAACCGGAAG AAACCGGGAG TTACGCACGT 
GTTCTTGCAC GATGTTAATC GGAGGGTGGA GAAGACTTTT GCCGAGGAGT 
TTTTATGCCG GAAGTATAGA GTCAACGCCG CCGGGAGGTT ATGGCATTTT 
GCTATTCCTC CGGCGGCTGC GAACGCTACG ATTGACTCTG GTGATTATAG 
GTTTTGCTAA GATTGCGACA CGATTTATCT TCTTATTTCC TCTTTTGCCC 
TTTTATTTTA CTTTTTTGAG GAATTTTATT ACAGCATTGG GTTCACTT

Gene models with high sequence identity

AT1G27930.1 [+] show detail - Protein of unknown function (DUF579)
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Conserved hypothetical protein CHP01627	1.8e-84
HMMPfam	Protein of unknown function DUF579	1.2e-75

See the detailed result >

AT1G27930.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF579)
Curator Summary: Function unknown. Interacts with eIF3.
Computational Description: FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT1G67330.1); Has 251 Blast hits to 250 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link: InterPro Scan - TAIR