F10002

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10002

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10002

Determination of introduced cDNA(s)

  • RAFL06-83-K19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-83-K19 - Resource: pda03860

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-83-K19 - full reading
    GCTCTTCTCC TTCACGGCGA AGTGACTCAC TTCCATGGAT TCCTCTCTGC 
    TCTCGGCGGC TACGGCCGAT ACCTTCAACG GCAATGCGGC GGATCAAATT
    CCTCCTCCGT TACAGCCTCC GGGAACGGAT ATGACTGGAA TTTCCTTCAG
    GGATCAGCTC TGGATCAATT CATACCCTCT TGATCGTAAC TACATCTTCG
    ATTACTTCGC TTTGTCTCCT TTCTACGATA CAACTTGCAA CAATGAGATT
    CTTCGGAGAA GATCCATTCA CCCTCTCGAT CTCTCTCACC TCTCGAAGAT
    GACAGGTCTA GAATATATGT TAACTGATGC TACTGAACCA AACCTGTTCG
    TCTTTCGTAA GCAAAAGAGA GATGGTCCTG AGAAAGTCAC ACCGATGCTA
    ACATATTATA TCTTGGATGG TTCTATTTAC CAAGCTCCTC AGCTTTGTAG
    TGTCTTCGCA GCTCGAGTTA GTCGGACTAT TTATAATATA TCCAAGGCTT
    TCACTGATGC TGCATCGAAA TTGGAGACCA TTAGACAAGT TGATACTGAA
    AACCAGAACG AACCTGCTGA GTCGAAGCCT GCTAGTGAGA CAGTTGATCT
    AAAGGAAATG AAGCGAGTCG ATGTCATTCT TACCTCATTA TATCGCAAGT
    TAGCGCCACC ACCTCCACCC CCACCCTTTC CTGAAGGTTA TGTTAGCCAA
    GAAGCATTAG GAGAAAAGGA AGAGCTTGGA ACACAGGGAG GAGAGTCACA
    ACCGCCTCAA GTTGATCCAA TTATCGATCA AGGTCCTGCT AAAAGAATGA
    AGTTCTAAGC TCATCAAAAT TGTTTCTTCA TCTATGCATG TATAGAATTT
    TTAGGTACTA GCAAAGGCTC TTCTACTTTT TCGCATTGTT TAATCTGAAC
    TCCTTACACA ATTGTTGACA TGATTACTTC TCATAAAGTT TCGCATACGA
    AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT3G21350.1 [+] show detail - RNA polymerase transcriptional regulation mediator-related
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Mediator complex, subunit Med6 1.6e-39
    HMMPIR Mediator complex, subunit Med6, metazoa/plant 2.7e-161
    HMMPanther Mediator complex, subunit Med6 3.2e-91

    See the detailed result >

    AT3G21350.1

    Model type
    Protein coding
    Short Description
    RNA polymerase transcriptional regulation mediator-related
    Computational Description
    MED6; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med6, metazoa/plant (InterPro:IPR016820), Mediator complex, subunit Med6 (InterPro:IPR007018); Has 344 Blast hits to 344 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 139; Plants - 37; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR