F10002

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10002

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
stem (PO:0009047)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10002

Determination of introduced cDNA(s)

  • RAFL06-83-K19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-83-K19 - Resource: pda03860

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-83-K19 - full reading 
    GCTCTTCTCC TTCACGGCGA AGTGACTCAC TTCCATGGAT TCCTCTCTGC 
    TCTCGGCGGC TACGGCCGAT ACCTTCAACG GCAATGCGGC GGATCAAATT 
    CCTCCTCCGT TACAGCCTCC GGGAACGGAT ATGACTGGAA TTTCCTTCAG 
    GGATCAGCTC TGGATCAATT CATACCCTCT TGATCGTAAC TACATCTTCG 
    ATTACTTCGC TTTGTCTCCT TTCTACGATA CAACTTGCAA CAATGAGATT 
    CTTCGGAGAA GATCCATTCA CCCTCTCGAT CTCTCTCACC TCTCGAAGAT 
    GACAGGTCTA GAATATATGT TAACTGATGC TACTGAACCA AACCTGTTCG 
    TCTTTCGTAA GCAAAAGAGA GATGGTCCTG AGAAAGTCAC ACCGATGCTA 
    ACATATTATA TCTTGGATGG TTCTATTTAC CAAGCTCCTC AGCTTTGTAG 
    TGTCTTCGCA GCTCGAGTTA GTCGGACTAT TTATAATATA TCCAAGGCTT 
    TCACTGATGC TGCATCGAAA TTGGAGACCA TTAGACAAGT TGATACTGAA 
    AACCAGAACG AACCTGCTGA GTCGAAGCCT GCTAGTGAGA CAGTTGATCT 
    AAAGGAAATG AAGCGAGTCG ATGTCATTCT TACCTCATTA TATCGCAAGT 
    TAGCGCCACC ACCTCCACCC CCACCCTTTC CTGAAGGTTA TGTTAGCCAA 
    GAAGCATTAG GAGAAAAGGA AGAGCTTGGA ACACAGGGAG GAGAGTCACA 
    ACCGCCTCAA GTTGATCCAA TTATCGATCA AGGTCCTGCT AAAAGAATGA 
    AGTTCTAAGC TCATCAAAAT TGTTTCTTCA TCTATGCATG TATAGAATTT 
    TTAGGTACTA GCAAAGGCTC TTCTACTTTT TCGCATTGTT TAATCTGAAC 
    TCCTTACACA ATTGTTGACA TGATTACTTC TCATAAAGTT TCGCATACGA 
    AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT3G21350.1 [+] show detail - RNA polymerase transcriptional regulation mediator-related
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Mediator complex, subunit Med6 1.6e-39
    HMMPIR Mediator complex, subunit Med6, metazoa/plant 2.7e-161
    HMMPanther Mediator complex, subunit Med6 3.2e-91

    See the detailed result >

    AT3G21350.1

    Model type
    Protein coding
    Short Description
    RNA polymerase transcriptional regulation mediator-related
    Computational Description
    MED6; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med6, metazoa/plant (InterPro:IPR016820), Mediator complex, subunit Med6 (InterPro:IPR007018); Has 344 Blast hits to 344 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 139; Plants - 37; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR