F10010

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10010

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10010

Determination of introduced cDNA(s)

  • RAFL08-17-G05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-17-G05 - Resource: pda04941

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-17-G05 - full reading 
    CTGGAACACC GAAGCTCTGG ATTAACCTAT TTTCACCTTC TAAGGTTCTT 
    CGTCGTTCTT ATTGATCTGT GAAGATGTAT TCGGGTCAGA ACAAGATCCA 
    CAAGGATAAG GGTGTTGCAC CAACAGAGTT TGAAGAGCAA GTTACTCAGG 
    CTTTGTTTGA CTTGGAGAAC ACCAACCAGG AGTTGAAAAG CGAGTTGAAA 
    GATCTCTACA TTAACCAAGC TGTTCAGATG GATATTTCTG GCAACCGCAA 
    AGCTGTTGTG ATCTACGTTC CATTCAGGCT GAGGAAAGCT TTCCGCAAGA 
    TTCATCTTCG TCTGGTCAGA GAGCTTGAGA AGAAGTTCAG TGGAAAAGAT 
    GTGATCTTTG TTGCTACCAG AAGAATCATG CGCCCACCAA AGAAAGGCTC 
    AGCTGTTCAG AGACCACGCA ACAGAACTCT TACTTCTGTC CATGAAGCCA 
    TGCTCGAGGA TGTCGCTTAC CCTGCTGAGA TTGTAGGAAA GAGAACCAGA 
    TACCGTCTTG ATGGCACCAA GATCATGAAG GTATTTTTGG ATAGTAAGCT 
    AAAGAACGAC ACTGAGTACA AGCTGGAGAC AATGGTGGGT GTGTACAGGA 
    AACTTACAGG GAAAGATGTA GTTTTCGAGT ACCCAGTCAT AGAAGCTTGA 
    AGAGATGAAT GTTTGTTTCA TTCTTTTTTG TCGGATAGAG AGCTTTTGAT 
    TCTGTTTGGG AGTAAAACTC TTTGCAAAGA TTTTGTTATT TCAGCATTTC 
    GCAATCTCTT CTTCAAAGTT CGATTT

    Gene models with high sequence identity

    1. AT3G02560.1 [+] show detail - Ribosomal protein S7e family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Ribosomal protein S7e 4e-115
    PatternScan Ribosomal protein S7e 0
    Coil coiled-coil 0
    HMMPfam Ribosomal protein S7e 2.8e-80

    See the detailed result >

    AT3G02560.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S7e family protein
    Computational Description
    Ribosomal protein S7e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554); BEST Arabidopsis thaliana protein match is: Ribosomal protein S7e family protein (TAIR:AT5G16130.1); Has 785 Blast hits to 785 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 354; Fungi - 147; Plants - 160; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR