F10011

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10011

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10011

Determination of introduced cDNA(s)

  • RAFL06-79-H24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-79-H24 - Resource: pda03761

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-79-H24 - full reading
    CTCTGATTCA TCTCTCTCTC TCTCTTCATT TCCATGGAAG GAAGGTGATG 
    AGCTTTCTCA ATCTCTCTTT ACTGATTCTT AATGAAAGTC ATCTCCTTTC
    TCTTTGGTAT CCCTTTTCTT CTTCTCTGCT TAATTCCTGA CCAAAAATTG
    TGACAAGATC TTTCAATCCA AAAGCTATAT ACATTAAGAG CTCAGGTCAC
    TATCTGACGG GATCCGTGAC AATAGTGGTT ACTGGAGTCA AAAGCAGCTC
    CTTGAATCTT GAGTGTTAAG TAGATAGGTA AGGTAACCGT TCATGGCCTC
    GAAGTATGGT TCTGGAGTTC TCCCAGAAAA TAAGAAGGAA AAGGGCGATA
    AGGAAACCCC GGAAACATCT TATTCCAGTC AAAGTGTCTC AGTAAACACT
    TTGGCAGATC AAGTATCTTC AACTTTGTCT TTTGCTCCAA GCAGCGACAG
    TAAAACTGGA GGTGAAGTTA AATTTAATGA AAAGTCTGAT CAGAGCGGGA
    AGAGTAACAC ATGTAGACCA AGCACAAGCA GTGATATCAG TGATGAGAGC
    ACATGTAGCA GCTTTAGTGG TAACAACAAG CCTCACAAGG CGAATGACGT
    GAGATGGGAA GCAATTCAAG CTGTCCGAAC GAAACATGGC GTATTGGGGT
    TGAACCATTT TAGGCTCTTG AAGAGGTTAG GGTGTGGGGA TATCGGAACT
    GTCCACCTTG CTGAGTTGCA CGGAACAAGG TGTTTTTTTG CAATGAAGGT
    TATGGACAAA GGGGCTTTGG CTAGCCGTAA AAAGCTTCTT AGAGCTCAGA
    CCGAGAGGGA GATATTGCAG TGTCTTGACC ACCCTTTTCT CCCAACTTTG
    TATAGTCACT TCGAGACTGA GAAGTTCTCA TGTTTGGTTA TGGAGTTCTG
    TCCTGGAGGT GACTTGCATA CCCTTCGACA AAGACAGCCC GGGAAGCGAT
    TTTCAGAACA AGCAGCAAAG TTTTATGTAG CGGAAGTACT TCTTGCAATG
    GAATATCTTC ATATGCTTGG CATCATATAC CGCGATCTAA AGCCAGAGAA
    TGTTCTTGTT AGAGATGATG GACATGTGAT GCTTTCTGAC TTCGACCTCT
    CCTTGAGATG TACTGTTAGC CCCACAGTGG TCAGATCAAC TGTTCTTGCG
    TCTGAAGGGC AAAAGAACTC GGGTTATTGT GCGCAACCTG CTTGCATCCA
    ACAGCCATCT TGCATTTCTG CTCCTACAAC ATGCTTTTCT CCACGTTATT
    TCTCAAGTAA ATCCAAGAAA GACAAGAAAA TGAAAAACGA AACTGGAAAC
    CAGGTAAGTC CATTGCCCGA GCTCGTTGCT GAGCCCACAA GTGCTCGCTC
    AATGTCATTT GTTGGCACAC ATGAGTATTT AGCTCCTGAG ATCATCAAAG
    GTGAAGGGCA TGGGAGTGCG GTTGATTGGT GGACTTTTGG GATCTTTTTG
    TATGAGCTAT TGTTTGGTAA AACCCCGTTT AAAGGGTCAG GAAACCGAGC
    AACACTCTTC AACGTTGTGG GTCAGCCTCT GCGTTTCCCA GAATCTCCAG
    TTGTCAGTTT TGCTGCTAGG GATTTGATTA GGAGTCTGCT TGTGAAAGAG
    CCTCAGCATA GATTAGCGTA TAAGCGTGGT GCAACTGAGA TGAAGCAACA
    TCCTTTCTTT GAAGGAGTGA ATTGGGCATT GGTTCGATGC GCTAGCCCAC
    CAGAGATACC AAAACCGGTT GATTATGAGA GTGCGCCTGC TACTCCAGCA
    GCAGCCACAT CTACTAGTGT CAAGTCTGAC CAGAGTAATT ATCTGGAGTT
    CGATTTCTTT TGACATATTT CAGCAAGAAA ACTGCCATTA GATTTATCAA
    TTTGTTCTTG GCGATCTGCA AATACGTTTA GTATTTTGAA AATGTGATAA
    CTCTTTTTAA TTCTTTGTCA ATGCCATTCT TGAGAGTTCA CGCCAAAAAA
    AAAAAAAAAA

    Gene models with high sequence identity

    1. AT4G26610.1 [+] show detail - D6 protein kinase like 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 43.453
    HMMPfam Serine/threonine-protein kinase-like domain 1e-35
    HMMPfam Serine/threonine-protein kinase-like domain 5.8e-20
    HMMPanther NONPHOTOTROPIC HYPOCOTYL PROTEIN 1(PHOTOTROPI 1.1e-255
    HMMPanther SERINE/THREONINE PROTEIN KINASE 1.1e-255
    HMMSmart Serine/threonine-protein kinase domain 8.5e-87
    HMMSmart Tyrosine-protein kinase, catalytic domain 4e-07
    Gene3D no description 1.1e-58
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 1.7e-84

    See the detailed result >

    AT4G26610.1

    Model type
    Protein coding
    Short Description
    D6 protein kinase like 1
    Computational Description
    D6 protein kinase like 1 (D6PKL1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6 protein kinase (TAIR:AT5G55910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR