F10015

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10015

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10015

Determination of introduced cDNA(s)

  • RAFL09-16-O21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-16-O21 - Resource: pda01859

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-16-O21 - full reading 
    AACCAGAAAG AAAAAAAAAA TGAAGAAGAG TATCGAAACT CCGTTATTGT 
    TGAACACCAA ACAATCACAA GACGAAGATA AAGAAAAAAT AAGATGGGAG 
    AAGATGAAGA AAGTTGCTTC AATGGCTGCT CCAATGGTCG CCGTGAACAT 
    GTCTCAATAC CTTCTTCAAG CAACTTCTAC AATGATCGTC GGTCACCGGA 
    GCGAACTCGC TCTCGCCGGA ATCGCTCTAG GAAGCTCCTT TGCTAATGTT 
    ACCGGCTTTG GTGTTCTTTT TGGACTTTCA GGTTCATTGG AAACACTATG 
    TGGTCAAGCA TATGGAGCAA AACAATATCA CAAGCTTGGA TCTTACACTT 
    TCACTTCAAT AGTTTTCCTT TTGATTATCT CTGTTCCGAT TTCGATTCTT 
    TGGATGTTCA TGAACCAGAT CTTGCTGTTG CTTCATCAAG ATCCTCAAAT 
    AGCAGAGTTA GCTGGTGTGT ACTGTCTCTG GCTGGTACCA GCTTTATTCG 
    GTTACTCTGT TCTCGAGTCG TTGGTTCGAT ATTTTCAGTC ACAAAGCTTG 
    ATTTATCCAA TGGTCTTGAG CTCTCTAGCT GCTCTGTCTT TCCATGTTCC 
    TCTCTGTTGG CTAATGGTTC ATAAATTTGA TTTTGGAGCC AAAGGAGCGG 
    CTGCGTCTAT CGGTATCTCT TACTGGCTCA ACGCGGTTTT TCTTTGGGTT 
    TATATGAAAC GCTCTAGTCG TTGTGTCGAA ACGCGGATTT ATATGTCCAA 
    GGATGTTTTT GTTCATACAA ATATCTTCTT TCAATTTGCC ATTCCTTCTG 
    CAATGATGTT TTGCCTTGAG TGGTTAGCTT TCGAGGTCAT TACTTTGCTG 
    TCTGGTCTTC TACCCAACTC AAAGCTCGAA ACATCGGTTA TTTCGATTTG 
    CCTCACGACC TCTTCATTGC ATTACAATCT AGTAAATGGA ATTGGTGATG 
    CAGCAAGCAC CAATGTGGCT AATGAGCTAG GAGCTGGGAA TCCGCGAGGG 
    GCTCGTGATT CTGCTGCGGC TGCAATCATA ATTGCAGCTG TTGAGTCAGT 
    TATTGTGAGC TCTAGTCTGT TCTTGTCTCG CAGTGTGTGG CCTTATGCAT 
    ATAGCAATGT GGAGGAAGTA ATTAGTTATG TGACTGATAT CACTCCTATT 
    CTTTGTATCT CAATCCTCAT GGACAGCTTC TTGACCGTCC TCTCCGGGAT 
    TGTGAGAGGA ACAGGGTGGC AAAAAATTGG AGCTTATGTG AACATAACCT 
    CTTATTATGT CATTGGTATT CCTGTTGGAC TTCTATTGTG TTTTCATCTT 
    CACTTCAATG GGAAAGGACT TTGGGCTGGT TTAGTCACAG GATCAACATT 
    ACAAACTCTA ATCCTATTTC TTGTTATTGG ATTTACCAAT TGGAGCAAAG 
    AGGCAATTAA GGCTAGGGAG AGAATTGGTG ATGAGAAAGT TTGGAGACAT 
    GACTCATTGC TTAATTGAAG AAAAAAAGAA ATACAAACTT TTGGGGGATT 
    TTGATTGCTT CTTTTTTTGT GTGTGTTTGT GCAATAACCT TCAGTTGATT 
    GTAATTTATA TTGAAAGTAC ATTATAGTCT TTCATATGAT ATTAGAGTGT 
    AAGAAAGTTT GAAAATATAT CTCAGCAAAA AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT1G66760.2 [+] show detail - MATE efflux family protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Multi antimicrobial extrusion protein MatE 1.3e-92
    HMMPfam Multi antimicrobial extrusion protein MatE 3e-30
    HMMPfam Multi antimicrobial extrusion protein MatE 4.1e-32
    HMMPanther MATE family transporter related protein 7.7e-278
    HMMPanther Multi antimicrobial extrusion protein MatE 7.7e-278

    See the detailed result >

    AT1G66760.2

    Model type
    Protein coding
    Short Description
    MATE efflux family protein
    Computational Description
    MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: response to wounding; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G66780.1); Has 11176 Blast hits to 10988 proteins in 2036 species: Archae - 239; Bacteria - 8105; Metazoa - 148; Fungi - 328; Plants - 1324; Viruses - 0; Other Eukaryotes - 1032 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR