F10025

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10025

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10025

Determination of introduced cDNA(s)

  • RAFL08-15-H03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-15-H03 - Resource: pda04853

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-15-H03 - full reading 
    ACTAGTGTTC GTCATCTTTG TTCGATTGAA GTTTGGGAAG TGGTGATGGT 
    AATAGGAGCA GCAGCGCGTG TAGCCATCGG CGGTTGTCGA AAGCTCATCT 
    CGTCACATAC CTCCCTCCTC CTCGTCTCTT CTCAGTGTCG CCAGATGAGT 
    ATGGACGCAC AAAGCGTTTC TGAAAAGCTT AGGAGTTCTG GTCTATTACG 
    AACTCAAGGT CTAATTGGAG GCAAGTGGCT TGACTCGTAT GACAATAAGA 
    CAATCAAGGT TAACAATCCA GCAACCGGTG AAATTATAGC TGATGTTGCA 
    TGTATGGGAA CAAAAGAGAC AAATGATGCT ATTGCTTCTT CTTATGAAGC 
    ATTTACTTCT TGGAGCAGAT TGACTGCTGG AGAGAGGAGT AAAGTTTTAC 
    GGAGATGGTA TGACCTCCTG ATTGCACACA AGGAAGAACT TGGACAACTT 
    ATAACTTTGG AGCAAGGAAA ACCACTCAAG GAAGCCATCG GAGAGGTAGC 
    ATATGGGGCA AGTTTTATTG AGTACTATGC GGAGGAGGCA AAACGTGTAT 
    ATGGTGATAT AATTCCTCCG AATCTGTCTG ATCGCCGACT GTTGGTTCTA 
    AAACAGCCTG TCGGTGTTGT TGGTGCAATT ACCCCTTGGA ACTTCCCCTT 
    AGCCATGATT ACTCGGAAGG TCGGCCCTGC TCTTGCTTCT GGATGCACGG 
    TGGTTGTTAA ACCATCTGAA CTTACGCCCC TAACAGCACT TGCTGCGGCT 
    GAACTTGCAC TTCAAGCTGG AGTTCCTCCG GGGGCACTTA ATGTGGTCAT 
    GGGAAATGCT CCTGAAATTG GGGATGCTTT GCTTACGAGT CCACAGGTGA 
    GAAAAATCAC GTTCACGGGA TCAACAGCAG TTGGGAAGAA GTTGATGGCA 
    GCTGCTGCAC CTACCGTCAA GAAGGTTTCT CTAGAACTTG GCGGCAACGC 
    ACCCTCTATA GTATTTGATG ATGCAGACCT GGATGTAGCT GTAAAAGGAA 
    CGCTTGCAGC GAAATTTAGG AATAGTGGTC AGACATGTGT TTGTGCGAAC 
    AGAGTACTTG TGCAAGATGG TATCTATGAT AAATTTGCTG AGGCCTTTTC 
    TGAAGCGGTT CAAAAATTAG AAGTAGGAGA TGGGTTTAGG GATGGGACAA 
    CCCAGGGTCC ACTTATAAAT GATGCAGCAG TGCAAAAGGT AGAGACATTT 
    GTACAAGATG CTGTTTCTAA GGGAGCAAAA ATCATCATTG GTGGCAAAAG 
    GCACAGTCTA GGGATGACTT TCTATGAGCC TACTGTTATC CGCGATGTTT 
    CGGATAACAT GATCATGTCT AAGGAGGAGA TTTTTGGACC TGTAGCTCCC 
    CTTATTCGGT TCAAAACCGA GGAGGACGCT ATCAGAATTG CTAATGACAC 
    AATTGCAGGA CTTGCTGCTT ATATATTCAC AAACAGTGTC CAAAGATCTT 
    GGCGTGTATT TGAAGCACTT GAATATGGAC TTGTAGGGGT GAACGAAGGA 
    CTCATATCAA CAGAGGTGGC TCCATTCGGG GGAGTGAAGC AGTCTGGTCT 
    TGGAAGGGAA GGATCCAAGT ATGGTATGGA CGAATACCTT GAGATCAAAT 
    ACGTATGCTT GGGAGATATG AATAGACACT GATTTGGTTT GTTTGAAAAG 
    CTTTAGAAAT TGTAAGTTTT TCTCCTCCAC TCGTATCCTT CTAATAAAAG 
    CTTACTGTGG AACATAATAA GGATTCGGAG GATACTTCTT AAGAAATAAA 
    GATTTGGTCT ACGACCAATT GTTAGCATGA TTTTTAAGTA ATAATTTGGG 
    GTTTCCATTT TAAAAAAAAA AAAGAAAAAA AAAAAAAAAA AAAAGAAAAA 
    AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT1G79440.1 [+] show detail - aldehyde dehydrogenase 5F1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Aldehyde dehydrogenase 1.9e-170
    superfamily Aldehyde/histidinol dehydrogenase 6.7e-185
    HMMPanther SUCCINATE SEMIALDEHYDE DEHYDROGENASE 1.4e-291
    HMMPanther Aldehyde dehydrogenase 1.4e-291
    PatternScan Aldehyde dehydrogenase, conserved site 0
    PatternScan Aldehyde dehydrogenase, conserved site 0
    HMMTigr Succinic semialdehyde dehydrogenase 5.5e-293
    Gene3D Aldehyde dehydrogenase, N-terminal 1.5e-109

    See the detailed result >

    AT1G79440.1

    Model type
    Protein coding
    Short Description
    aldehyde dehydrogenase 5F1
    Curator Summary
    Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH). Nomenclature according to Kirch, et al (2004).
    Computational Description
    aldehyde dehydrogenase 5F1 (ALDH5F1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, NAD or NADH binding, copper ion binding, succinate-semialdehyde dehydrogenase activity; INVOLVED IN: in 6 processes; LOCATED IN: mitochondrion, chloroplast, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160), Succinic semialdehyde dehydrogenase (InterPro:IPR010102); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 2B4 (TAIR:AT3G48000.1); Has 62487 Blast hits to 62143 proteins in 3037 species: Archae - 481; Bacteria - 36218; Metazoa - 2614; Fungi - 2131; Plants - 1502; Viruses - 0; Other Eukaryotes - 19541 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR