F10118

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10118

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10118

Determination of introduced cDNA(s)

  • RAFL09-42-D18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-42-D18 - Resource: pda08346

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-42-D18 - full reading 
    ACCTATGAGC GATGGTGTTT TGGTAAATAC TTGGGAGGAG TTACAAGGAA 
    ACACTCTCGC TGCGCTTAGA GAGGACGAAG AATTGAGCCG GGTCATGAAA 
    GTACCGGTTT ATCCTATTGG GCCAATTGTT AGGACTAACC AGCATGTAGA 
    CAAACCCAAT AGTATATTCG AGTGGCTAGA CGAGCAACGG GAAAGGTCAG 
    TGGTGTTTGT GTGTTTAGGG AGCGGTGGAA CGTTGACGTT TGAGCAAACA 
    GTGGAACTCG CTTTGGGTTT AGAGTTAAGT GGTCAAAGGT TCGTTTGGGT 
    TCTACGTAGG CCCGCTTCAT ATCTCGGGGC GATCTCCAGC GATGATGAAC 
    AGGTAAGTGC CAGTCTACCT GAAGGTTTCT TGGACCGCAC GCGTGGTGTG 
    GGGATTGTGG TTACGCAATG GGCACCACAA GTTGAGATCT TGAGCCATAG 
    ATCGATCGGT GGGTTCTTGT CTCACTGCGG TTGGAGTTCG GCTTTGGAAA 
    GTTTGACTAA AGGAGTTCCG ATCATCGCTT GGCCTCTTTA TGCGGAGCAG 
    TGGATGAATG CCACGTTATT GACTGAGGAG ATCGGTGTGG CCGTTCGTAC 
    ATCGGAGTTA CCGTCGGAGA GAGTCATCGG AAGGGAAGAA GTGGCATCTC 
    TGGTGAGAAA GATTATGGCG GAAGAGGATG AAGAAGGACA GAAAATTAGG 
    GCTAAAGCTG AGGAGGTGAG GGTTAGCTCC GAACGAGCTT GGAGTAAAGA 
    CGGGTCATCT TATAATTCTC TATTCGAATG GGCAAAACGA TGTTATCTTG 
    TACCGTGATT CGAGAATAAC ATCATGAACA ACAATTTCTG TTTAAGATAT 
    CAACTTTTTC TATATGAATA TATATTAAGG TGTGTT

    Gene models with high sequence identity

    1. AT2G18570.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 5.9e-30
    PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
    Gene3D no description 5.2e-11
    HMMPanther UDP-GLUCOSYLTRANSFERASE 3.2e-88
    HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 3.2e-88
    HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 1.8e-23

    See the detailed result >

    AT2G18570.1

    Model type
    Protein coding
    Short Description
    UDP-Glycosyltransferase superfamily protein
    Computational Description
    UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT2G18560.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR