F10202

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10202

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F10202

Determination of introduced cDNA(s)

  • RAFL14-06-B12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-06-B12 - Resource: pda18109

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-06-B12 - full reading 
    ATTCAGTCGG ACCAACTTGT GACCGAAGAA AGCAAATTGA GACTACGCAC 
    CAACTAGTCC TTTGGTTTGT ATCTTAAGAT AAAGGTTTCT TTTATGGACG 
    GTTCTTCGTT TCTCGACATC TCTCTCGATC TCAACACCAA TCCTTTCTCC 
    GCAAAACTTC CGAAGAAGGA GGTCTCAGTT TTGGCTTCTA CTCACTTAAA 
    GAGGAAATGG TTGGAGCAAG ACGAGAGCGC AAGTGAGTTA CGAGAGGAGC 
    TAAACAGAGT TAATTCAGAG AACAAGAAGC TAACAGAGAT GTTAGCTAGA 
    GTCTGTGAGA GCTACAACGA ACTACATAAT CATTTGGAGA AGCTTCAGAG 
    TCGCCAGAGC CCTGAAATCG AGCAGACCGA TATACCGATA AAGAAAAGAA 
    AACAAGACCC GGATGAGTTC TTAGGCTTTC CTATTGGACT CAGTAGTGGA 
    AAAACTGAGA ACAGCTCCAG CAACGAAGAT CATCATCATC ATCATCAGCA 
    ACATGAGCAG AAAAATCAGC TTCTTTCATG TAAAAGACCA GTCACTGATA 
    GCTTCAACAA AGCAAAAGTT TCGACTGTCT ACGTGCCTAC TGAAACATCG 
    GACACAAGCT TGACAGTTAA AGATGGATTT CAATGGAGGA AATACGGACA 
    AAAGGTTACA AGAGACAACC CGTCACCTAG AGCTTACTTT AGATGCTCGT 
    TTGCACCGTC TTGTCCAGTA AAAAAGAAGG TACAACGCAG CGCAGAGGAT 
    CCATCTTTAC TTGTAGCGAC ATACGAAGGG ACGCATAACC ACTTGGGTCC 
    AAATGCTTCT GAAGGGGATG CTACAAGCCA GGGTGGGTCA AGCACAGTGA 
    CTTTGGATCT GGTTAATGGC TGTCATAGAC TAGCGTTGGA GAAAAACGAA 
    AGGGATAATA CGATGCAAGA GGTTCTGATT CAACAAATGG CGTCATCGTT 
    AACAAAAGAT TCGAAATTTA CAGCTGCTCT TGCTGCTGCT ATATCTGGGA 
    GGTTAATGGA GCAATCTAGA ACATGAACGT TTTTAGTGAA TGTATTGTTT 
    TTGTTTGTTT AGAATGATTC TTCGTTTTCG AATTGTGTCT TTCGATTAGG 
    AGATAAAAGA TGTATATAAA TATTATAAGT AGATGAAGAA ATCGTATAAG 
    TATTCGAGAA ACTTTAAATG TACGAATTCT ATATAACCAG TTAGATGTCG 
    TCTGAATACT GTATATGAAA ATTTTGAAAT AAATGATGTG GCTAAAAAAA 
    AAA

    Gene models with high sequence identity

    1. AT4G31800.1 [+] show detail - WRKY DNA-binding protein 18
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart DNA-binding WRKY 1.4e-33
    Gene3D no description 2.3e-22
    ProfileScan DNA-binding WRKY 25.499
    HMMPfam DNA-binding WRKY 4.1e-27
    Coil coiled-coil 0

    See the detailed result >

    AT4G31800.1

    Model type
    Protein coding
    Short Description
    WRKY DNA-binding protein 18
    Curator Summary
    Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.
    Computational Description
    WRKY DNA-binding protein 18 (WRKY18); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 60 (TAIR:AT2G25000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR