F10206

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10206

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F10206

Determination of introduced cDNA(s)

  • RAFL09-82-E24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-82-E24 - Resource: pda08872

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-82-E24 - full reading 
    AAATTCTCTA TTTGCCTCTC TCAGTTTTCG AGAAGACTAA AAGCGAATTT 
    AGGGTTTAGT CATCTCTCCG ACATGGTTGG TGCCGCGATT TTGGAATCTC 
    CCGGCGAAGG AATTGGATCT AACAGCATTC TCTCGCAAAA GAGACAACTT 
    TCTTCTAGTG ATGCAGCTAA GAGAGACGCT AAGAAACGCT CGACAATGCT 
    AATGGATCTG GAGATTCTCG ATTGTCCCAT TTGCTACGAA GCTTTCACAA 
    TTCCCATCTT CCAGTGTGAT AATGGACATT TGGCTTGTTC TTCTTGCTGT 
    CCCAAACTAA ATAACAAATG CCCTGCGTGT ACTTCGCCTG TTGGCCACAA 
    TCGCTGCAGA GCAATGGAGA GTGTTCTTGA ATCGATCTTG ATCCCGTGTC 
    CGAACGCCAA GTTAGGTTGC AAAAAGAATG TATCTTATGG GAAAGAGTTA 
    ACTCATGAAA AGGAATGCAT GTTCTCTCAT TGCGCCTGCC CTGCATTGGA 
    TTGCAATTAC ACTAGCTCAT ACAAGGATCT GTACACTCAC TATCGTATTA 
    CCCATATGGA AATAAACCAG ATTAATACGT TCATTTGTGA CATTCCCTTA 
    AGTGTCCGGA TGAACATCAG CAAAAAGATA TTGATTAGAA CGGAACACTT 
    GACGAATCAT TTGTTTGCAG TGCAGTGTTT CAGGGAGCCG TATGGTGTGT 
    ATGTAACTGT AAGCTGCATT GCGCCATCTT CTCCAGAATT AAGTCAGTAC 
    TCATATGCTC TCTCTTACAC TGTCGATGGA CACACTGTGA TTTACCAATC 
    ACCAGAGGTG AAGAGGGTTC TTAAGTTGAG TTTTCAAACC CCGCAAGAGA 
    ATTTCATGTT GATTCCCAAC AGTTTATTGC GTGGTGATGT GTTGGAAATG 
    AGGATTAGCG TCAAGAAGTT GAACAAAGAG TAAGAAGGTT GGGGTCTTCC 
    TGTTAGAAAA CTCTTATCTG TCTCGTTTTA GTTATCTTAA CCCGCCCATA 
    GTCGTTATGG TTGATGAGGG TTGTAATTTT AGAGACTTGG TGCAATCGAC 
    CAACAAAACG TTTCACAATG TTTTCAATCT AAACTAAGAT ATAATTTATG 
    CATAGGCCAT TTGCTATGAA GCATTGACGA TTCCTGTCTT CCAAGAAGAT 
    TTTTCCAC

    Gene models with high sequence identity

    1. AT5G37890.1 [+] show detail - Protein with RING/U-box and TRAF-like domains
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SEVEN IN ABSENTIA HOMOLOG 1.8e-146
    HMMPanther Seven-in-absentia protein, sina 1.8e-146
    Gene3D Seven In Absentia Homolog-type 3.8e-08
    HMMPfam Seven-in-absentia protein, TRAF-like domain 6.7e-12
    superfamily TRAF-like 2.5e-47
    superfamily RING/U-box 1e-12
    ProfileScan Zinc finger, RING-type 8.919
    ProfileScan Zinc finger, SIAH-type 14.527

    See the detailed result >

    AT5G37890.1

    Model type
    Protein coding
    Short Description
    Protein with RING/U-box and TRAF-like domains
    Computational Description
    Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Zinc finger, RING-type (InterPro:IPR001841), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT5G37910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR