F10214

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10214

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10214

Determination of introduced cDNA(s)

  • RAFL09-47-K03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-47-K03 - Resource: pda06339

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-47-K03 - full reading
    ACCACCTCTC AAAGTCGCCT GAGAATCAGA GCTCTCTCTT TTCTCTCTCC 
    CATCCTTTTT TTTTTTTTTT TTTTTTCTGT CGGGTTCTTT GTGCTTTCCG
    TCAATTTCTT CTCGGAGAGC GACTAATTTC GACGATTAGC TCGGTGGCTG
    TTTTCTTTCA ATTCGTGCAT TTCGTCAGAT TAACAGGTTT TAAGGGAAAT
    TTCTTCCACG CGACGACTTT TTTTTGTTTG GTTCAAGAAT CAGTAAATGT
    ATTCGCCTTT CATTGCAGTA GTAGGGTTTA TAGTTTCTTA AGCTAGAGGT
    GTGAGTTTTT TTCTTCTCCT TAGGTTTTGA GATATAAATT TTGGGTTGTA
    ATGGGGGATA TAACTTGGGT TGAAGAGGGT AATGGCTCTG CGACTTCTTC
    GAGGAAAAGG AAAGCGAGAC CTAAACGATT CGAATTTGTA GGATGGGGTT
    CGAGACAACT CATTGAGTTT CTACACTCTC TTGGTAAAGA TACTTCAGAA
    ATGATCTCTC GTTATGATGT TAGTGACACT ATTGCTAAGT ATATTTCAAA
    GGAAGGTCTT TTAGATCCTT CCAATAAGAA GAAAGTTGTG TGCGACAAAA
    GATTGGTTTT GCTTTTCGGG ACTAGGACGA TTTTCAGAAT GAAAGTCTAT
    GATCTCCTTG AAAAGCATTA CAAAGAGAAT CAGGATGATT CTGACTTTGA
    TTTTCTCTAC GAGGATGAGC CGCAGATTAT TTGTCATTCG GAGAAGATAG
    CTAAACGGAC AAGTAAGGTT GTTAAGAAAC CTAGAGGTAC TTTTGCTGCT
    ATTGTGAGTG ATAATATCAA GCTTCTCTAC TTGAGAAAGA GCTTAGTCCA
    GGAACTGCTC AAGTCTCCTG ATACCTTTGA GGGTAAAATG TTGGGAAGTT
    TTGTGAGGAT CAAGTCTGAC CCTAATGATT ATCTTCAGAA GTACCCTTAT
    CAGCTTGTTC AGGTGACAGG CGTGAAGAAG GAACATGGGA CTGATGATTT
    TCTTCTTCAG GTTACAAATT ATGTGAAAGA TGTTTCTATA TCTGTGCTAT
    CTGATGATAA TTTCTCCCAG GTAATATACT TAGAAGTTAG AAATAATGTT
    CATACCTCAA TTTTTTGCTT ATGATCGATG CAAAGTCAGG TACCCATGTA
    GTTTAAGAAC CGGCAATTGG GATTCTGTTC TAGTTATATA ACACATACTA
    TCTTTCACTA TTACTATGTT TGACAAACGC CCCCATTTTA ACCTATATAA
    TCTGTCGTTT ATCATAGCTT GATGTAAACT TTTTCAGGAG GAATGTGAAG
    ATTTACATCA GAGAATAAAG AACGGACTTC TTAAGAAGCC TACTATTGTA
    AGTTTTCTAT TAAGATTGCC AAGACATGCC ATTTTGCAGA GGTTTGGAAG
    ATAATTATTG CAGCTCCCTC TGTTAAAGAT TTGCATTTTT TCTGTCATGT
    ATCCCAGCGA CTTGCTAACC TTGCTGTTCA TGACATTTTG ATTTTGTAGT
    TCTTTAATCA TAATTCATTT TGAACCTTGG ATAGGTGGAG ATGGAAGAAA
    AAGCTAAAAA ATTACATAAA GATCAAACAA AACACTGGCT TGGAAGAGAA
    ATTGAATTGT TAAAAAGGCT TATTGATCGG GCTAATGAGA AGGGATGGCG
    AAGAGAGCTG TCCGAGTACC TAGATAAGAG GGAGCTTCTT CAAAATCCAG
    ATGAACAGGC CAGGCTACTC CGCGAAGTTC CAGAAGTTAT TGGAGAGGAA
    CTTGTACAAA ACCCTGAAGT TTCGTCCCCT GAGGCTCATA AAAGTGACAA
    CGAGCAACGA TTGAGTGAAT CTCCATTATC GTGCATCCAT GAAACCCCAG
    AAGCTCGCAA CCTCTTTGGT GGAGAAGATC AACAATTTAA TAACGGCTAT
    GTGATGTCAA ACCCCATCAC AACTCCGGGA ATCACATCTT GTGCTACGGA
    AATTAACAAG GGATTGCCAA CATGGATTGC TTCTGCAGGT GCTGAGTATC
    TTCATGTAGA TGTAGAGCAG CCAGCAAATG GCATCATTGG AGGAGAGACG
    CCGACTGAAG AGTCTAAAGT TTCTCAGCTT CAGTCAAGTA TACCAGTAAA
    TAATGTCGAC AACGGATCTC AAGTTCAACC AAATCCATCA GAAGTAATCG
    AACTGAGCGA TGATGATGAA GATGACAACG GTGATGGAGA GACCCTGGAC
    CCTAAAGTTG AAGACGTCCG GGTTCTGTCT TATGATAAAG AGAAGTTAAA
    CTGGTTATAC AAAGATCCTC AGGGTCTTGT ACAGGGACCA TTCTCTCTCA
    CACAACTCAA AGCTTGGAGC GACGCAGAGT ATTTCACCAA ACAGTTCAGG
    GTTTGGATGA CAGGAGAAAG CATGGAATCC GCAGTTTTAC TAACCGATGT
    TCTTCGTCTA GTGTAACTAA TGCAATACTC TGAAGACTAT TAGATTCAGT
    CAAAAGTGGT TTCAGTAATC TGTTATCGTC TGTCATTATC TTCAAATTGC
    AGTAGGTTTT GCTCCTCCTT TTCAGTAAAC AGC

    Gene models with high sequence identity

    1. AT5G08430.1 [+] show detail - SWIB/MDM2 domain;Plus-3;GYF
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily GYF 0.00000000005
    superfamily SWIB/MDM2 domain 8.2e-25
    HMMSmart GYF 0.00000031
    HMMSmart Plus-3 domain, subgroup 2.3e-35
    HMMPfam GYF 0.00000000000011
    HMMPfam Plus-3 1e-19
    HMMPfam SWIB/MDM2 domain 9e-18
    Gene3D SWIB/MDM2 domain 1.4e-39
    HMMPanther GRB10 INTERACTING GYF PROTEIN 0.000011
    ProfileScan GYF 15.513
    ProfileScan Plus-3 21

    See the detailed result >

    AT5G08430.1

    Model type
    Protein coding
    Short Description
    SWIB/MDM2 domain;Plus-3;GYF
    Computational Description
    SWIB/MDM2 domain;Plus-3;GYF; FUNCTIONS IN: DNA binding; INVOLVED IN: histone modification, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Plus-3 domain, subgroup (InterPro:IPR018144), SWIB/MDM2 domain (InterPro:IPR003121), Plus-3 (InterPro:IPR004343), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain;Plus-3;GYF (TAIR:AT5G23480.1); Has 361 Blast hits to 341 proteins in 67 species: Archae - 0; Bacteria - 4; Metazoa - 120; Fungi - 28; Plants - 189; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR