F10442

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10442

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10442

Determination of introduced cDNA(s)

  • RAFL09-43-G22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-43-G22 - Resource: pda08373

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-43-G22 - full reading 
    TCCCCCCCCG TCCGGTTTCC CAATTTTCTT CACGCTTCTC CCATACCCTC 
    TTACCTATCT TCTTATTCTT CTTAGATTTC TCCATCGATC TCGAACAAAG 
    GATTCACCTT TGCATTCATA TTCTTTATCT TGACTTCAAA GTCAAACCTC 
    CGATTCGATA AACAAATTGG GGAATGGATG CTTGCTTTCG TCTTTCTCAC 
    CAGATCTGAA GCACCCAAGT TCCAAATTCA TATTCGATTC ACCGGCGGCT 
    AGGTATTTCT CAAATCGGTC AGATTTCTGA GATTTATTTA TGAGAACAAT 
    GGTGACGACC AAATTGGGAA TGCTCCATTA TGTAATTGAC CATATATATG 
    GAGCGTTTAT GCACCGCACC AAGATGACCC CACCCTTCTT CTCTCGAGGT 
    TGGGGTGGTC CCAATCTCGA ATTGCTCGAG CGTATGGTTC AACGCCTCTT 
    CCCTCTTGAG GTTCAAGGTC AGAATTGGCC ACCGCCTCTG GTTCGTCCAG 
    TCTGGAGAAC TGTTTGGGAG ACAAAGACCG CTACTTTGAG AGAAGGTGTT 
    TTCCAGACTC CTTGTGCCGA TGAGCTTACC GCTGCTTTGC CTCCGGAGTC 
    TCGCACAGCC AGGGTTGCTT GGCTTGTCCC CAAAAACGTT CCTCCCCAAA 
    AGATGGCTTG TGTGGTTCAT CTTGCAGGCA CAGGTGATCA TACATATGAC 
    CGAAGATTGC GTTTGGGTGG ACCGTTGGTG AAACAAAACA TTGCAACAAT 
    GGTGTTGGAA AGCCCTTTCT ATGGCCAAAG GCGTCCCTTT CTTCAATGCG 
    GTGCGAGACT CCTCTGTGTT AGTGATCTAC TTTTGCTAGG GAGGGCAACA 
    ATCGAAGAGT CCCGCAGTCT TATTCACTGG CTAGACACTG AGGAAGGCTT 
    TGGAAAGATG GGTGTTTGTG GGCTAAGTAT GGGAGGAGTA CATGCTTCGA 
    TGGTTGGATC GCTTCATCCA ACACCAGTTG CAACACTTCC ATTCCTATCT 
    CCGCACTCTG CTGTTGTTGC ATTCTGCGAA GGAATATTAA AGTATGGGAC 
    TGCTTGGGAG GCACTGAGGG AGGAACTTGC AGCACAGAAG ATCACAATGA 
    CTCTTGATGA AGTGAGAGAG CGGATGCGGA ATGTTCTCTC CCTCACAGAC 
    GTCACTCGCT TCCCTATTCC CAAAAACCCT GATGCTGTTA TCTTTGTTGC 
    TGCAACTGAT GATGGATACA TACCAAAACA CTCAGTGTTG GAGCTTCAAA 
    AGGCGTGGCC TGGTTCAGAA GTGAGATGGG TCACAGGTGG ACACGTGTCT 
    TCCTTTATAC TTCACAATGA TGAGTTTCGC AGAGCAATCG TGGACGGTCT 
    CGATAGATTA GACTGGAAGG AGTCATGGTG AGGTATAACA TGCGTAACAC 
    AGCCCCTTTT TAACACAAAG GGAGGGGTCA TTATGTAAAT GTCTTAATCT 
    CCTCTTGTTG TATCATTTGT GTATGTTAGG AATAAGATTC TTTGCGCTTT 
    CAAAAGTGGT GGGCTCTGAT ATTTATTTGT CTTGTGTTGT TTTTGTCCCA 
    ACACATAGCA ACCATTTTAG GGGTTTTCGC TCATTACATT CCATTAATAT 
    GTCATATACA TTGGATCTTT AACATTGTTT TTCTTTGCGC TCT

    Gene models with high sequence identity

    1. AT3G12150.1 [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2048 (InterPro:IPR019...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 2.3e-07
    HMMPfam Protein of unknown function DUF2048 7.3e-118
    superfamily alpha/beta-Hydrolases 5.8e-19
    HMMPanther SUBFAMILY NOT NAMED 0
    HMMPanther FAMILY NOT NAMED 0

    See the detailed result >

    AT3G12150.1

    Model type
    Protein coding
    Computational Description
    unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2048 (InterPro:IPR019149); Has 421 Blast hits to 334 proteins in 155 species: Archae - 2; Bacteria - 147; Metazoa - 215; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR