F10451

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10451

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10451

Determination of introduced cDNA(s)

  • RAFL05-07-G16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-07-G16 - Resource: pda01133

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-07-G16 - full reading
    AAACAAAAAC TCGTGGAGGA GATATGCAAT TGCTGACGCT AAATCCGGCG 
    GCCATTTCCA GGACGCCGCC GCAAGCCATA GACCCTTCCT CATCCTCGAG
    TCTTCTTCTT CCTTTTCCTC AGATTTTGAG CTCCCAACGC GCTCTTGGTC
    TTGTAGCTAG GCCTTGTAAT CCACTTCGAC GAGGATTATC TAGGTTTTTA
    TCAAGTCGAC AGCTTTTCCG ACGATCCAAA GTTGTCAAGG CAGTAGCAAC
    CCCAGACCCC ATCTTGGAAG TACCTTTAAC TGAGGAAAAT GTAGAAAGCG
    TTTTGGATGA AATCCGACCT TACCTTATGT CTGATGGTGG TAATGTGGCA
    TTACATGAGA TCGATGGAAA TATTGTGCGG GTTAAGCTGC AGGGAGCATG
    CGGATCATGT CCAAGTTCTA CTATGACAAT GAAGATGGGT ATTGAGCGTC
    GTCTAATGGA AAAGATCCCT GAAATAGTGG CTGTAGAAGC TCTTCCAGAT
    GAAGAGACTG GCCTTGAACT GAATGAGGAA AACATTGAAA AGGTGCTGGA
    AGAAATCAGG CCTTACTTAA TCGGAACAGC AGATGGATCG CTTGATCTAG
    TGGAGATTGA AGATCCAATC GTGAAGATAA GAATCACAGG ACCTGCAGCT
    GGAGTCATGA CAGTTCGTGT AGCAGTCACT CAGAAACTAA GAGAGAAAAT
    TCCATCAATC GCAGCTGTTC AACTTATATA GAAACAACAA CTCTTCTTGT
    ATGCTTTGTA TTAGCTCCCT TGTATAGTTG TTGTGCATAG ATTATGTGTT
    TTGTTGACAT TTGCTATTTG TCCTCAAATA AGTTTTCAAC ATTTTTGTTT
    TACTTAGAAA AAAAGTCCTT ATTAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT5G49940.1 [+] show detail - NIFU-like protein 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    BlastProDom NIF system FeS cluster assembly, NifU, C-terminal 5e-30
    BlastProDom NIF system FeS cluster assembly, NifU, C-terminal 6e-20
    HMMPfam NIF system FeS cluster assembly, NifU, C-terminal 3.3e-27
    HMMPfam NIF system FeS cluster assembly, NifU, C-terminal 0.00000049
    HMMPanther IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELA 1.2e-62

    See the detailed result >

    AT5G49940.1

    Model type
    Protein coding
    Short Description
    NIFU-like protein 2
    Curator Summary
    Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast.
    Computational Description
    NIFU-like protein 2 (NFU2); FUNCTIONS IN: structural molecule activity; INVOLVED IN: chloroplast organization, iron-sulfur cluster assembly; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NFU domain protein 3 (TAIR:AT4G25910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR