F10518

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10518

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10518

Determination of introduced cDNA(s)

  • RAFL09-67-C04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-67-C04 - Resource: pda08659

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-67-C04 - full reading
    AGGTGATCGA AAGATACCAA ACTAAAGAGT TTAACTTTCT TCTTCCTTCT 
    TCTTTACTTC AACATCTGAT ATTTTCTCTC TCTCTTTTAT TCAGTCTGAA
    ACAATATTTC TCGGTAGATT AAGATCTAAA GCTCGTTGAT CTAGATTCTT
    GTTTCTATTT TTGTGTGTTT TAGGCTTTGT TGGTTTTACC AAGTGTTGTG
    ATTCAGTTTG TTTTGAGGTC TGAGTCTATG GGGGAGATTG TGGTTTTAAG
    TAGTGATGAT GGTATGGAGA CTATAAAGAA CAGAGTAAAG TCATCGGAAG
    TTGTTCAGTG GGAGAAGTAT TTGCCTAAAA CTGTACTTAG GGTTTTGTTA
    GTTGAATCTG ATTACTCAAC TCGTCAAATC ATCACTGCCC TTCTTCGTAA
    ATGCTGTTAC AAAGTTGTAG CTGTTTCTGA TGGTTTAGCT GCGTGGGAGG
    TTCTAAAGGA GAAGTCACAT AACATTGATC TTATACTAAC AGAGCTGGAT
    TTGCCATCTA TATCTGGTTT TGCTCTGCTT GCTTTGGTAA TGGAGCATGA
    AGCTTGCAAG AACATTCCTG TCATAAGTAC GATGTGATGT CTTCTCAAGA
    TTCGATAAAA ATGGTGTTGA AGTGTATGCT GAGAGGTGCT GCTGATTATC
    TAATCAAACC AATGAGGAAA AACGAGTTGA AAAATCTATG GCAACATGTT
    TGGAGAAGAC TGACTGTAAA TTTTTTATTT CCTTTTTTGA GGTTTCCTTG
    TGTTGAAGTT TGAAACTTGA AAGACTTATT GTCTTTTTTG GTTATGGATC
    AGTTGCGTGA TGATCCTACT GCTCATGCTC AAAGCTTACC AGCTTCACAG
    CACAACCTTG AAGATACTGA TGAAACTTGT GAAGATTCCA GATATCATTC
    AGATCAAGGA AGTGGTGCTC AGGCTATCAA TTACAATGGT CACAATAAGC
    TGATGGAGAA TGGCAAATCA GTGGATGAAA GAGACGAGTT TAAGGAAACT
    TTTGATGTGA CAATGGATTT GATTGGTGGA ATTGACAAGC GTCCTGATAG
    TATTTATAAA GACAAGAGTC GAGATGAGTG TGTTGGTCCT GAGCTTGGAC
    TTTCTCTGAA AAGATCTTGC TCTGTAAGTT TTGAGAACCA AGATGAAAGC
    AAGCATCAAA AGCTTAGCCT CTCTGATGCG TCGGCCTTCT CAAGATTTGA
    GGAAAGCAAG TCAGCAGAAA AAGCCGTCGT TGCTTTAGAG GAGAGTACTT
    CAGGTGAGCC AAAGACACCA ACCGAATCAC ATGAAAAGTT AAGAAAAGTA
    ACATCTGATC AAGGAAGCGC CACAACGAGC AGCAACCAGG AGAATATCGG
    ATCATCAAGC GTAAGCTTCC GTAACCAAGT TCTTCAGTCC ACAGTAACGA
    ATCAGAAGCA AGATTCACCC ATACCGGTAG AATCAAATCG CGAGAAAGCA
    GCTAGCAAGG AAGTAGAAGC TGGTTCTCAA AGCACCAATG AGGGGATTGC
    TGGACAAAGC AGTAGCACAG AGAAACCAAA GGAAGAAGAA AGTGCGAAAC
    AACGTTGGAG TAGAAGCCAG AGAGAAGCTG CATTGATGAA GTTCCGGTTG
    AAGAGGAAAG ATCGATGCTT TGACAAAAAG GTTCGGTACC AGAGCAGGAA
    GAAGCTAGCA GAACAACGTC CTCGAGTGAA AGGCCAGTTC GTGCGAACCG
    TGAATTCAGA CGCGTCTACA AAATCATGAA GAGCTCTTTC AGTTTTTCCT
    CTGATTTCTT TTGTTGATTT TATAACAGAA ACTTATTTAG CTTTTGCAAT
    CTTTAGTGTG CTTTTTTTTT TTTTATGTAT TTGATTGGCT TCTTCTTCTC
    AGCTAATATG AGATACTGGG GCAACTTTTG T

    Gene models with high sequence identity

    1. AT2G46790.1 [+] show detail - pseudo-response regulator 9
      E-value: 0; Score: 98.88

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam CCT domain 7.9e-20
    HMMPfam Signal transduction response regulator, receiver domain 1.4e-10
    HMMPanther TWO-COMPONENT SENSOR HISTIDINE KINASE BACTERI 6.4e-07
    HMMPanther SENSOR HISTIDINE KINASE-RELATED 6.4e-07
    Gene3D no description 4.9e-12
    superfamily CheY-like 1.9e-15
    ProfileScan CCT domain 15.666
    ProfileScan Signal transduction response regulator, receiver domain 19.069

    See the detailed result >

    AT2G46790.1

    Model type
    Protein coding
    Short Description
    pseudo-response regulator 9
    Curator Summary
    Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay. Acts as transcriptional repressor of CCA1 and LHY.
    Computational Description
    pseudo-response regulator 9 (PRR9); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G46670.1); Has 67918 Blast hits to 66591 proteins in 3038 species: Archae - 212; Bacteria - 59069; Metazoa - 375; Fungi - 591; Plants - 3099; Viruses - 4; Other Eukaryotes - 4568 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR