F10518

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10518

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10518

Determination of introduced cDNA(s)

  • RAFL09-67-C04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-67-C04 - Resource: pda08659

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-67-C04 - full reading 
    AGGTGATCGA AAGATACCAA ACTAAAGAGT TTAACTTTCT TCTTCCTTCT 
    TCTTTACTTC AACATCTGAT ATTTTCTCTC TCTCTTTTAT TCAGTCTGAA 
    ACAATATTTC TCGGTAGATT AAGATCTAAA GCTCGTTGAT CTAGATTCTT 
    GTTTCTATTT TTGTGTGTTT TAGGCTTTGT TGGTTTTACC AAGTGTTGTG 
    ATTCAGTTTG TTTTGAGGTC TGAGTCTATG GGGGAGATTG TGGTTTTAAG 
    TAGTGATGAT GGTATGGAGA CTATAAAGAA CAGAGTAAAG TCATCGGAAG 
    TTGTTCAGTG GGAGAAGTAT TTGCCTAAAA CTGTACTTAG GGTTTTGTTA 
    GTTGAATCTG ATTACTCAAC TCGTCAAATC ATCACTGCCC TTCTTCGTAA 
    ATGCTGTTAC AAAGTTGTAG CTGTTTCTGA TGGTTTAGCT GCGTGGGAGG 
    TTCTAAAGGA GAAGTCACAT AACATTGATC TTATACTAAC AGAGCTGGAT 
    TTGCCATCTA TATCTGGTTT TGCTCTGCTT GCTTTGGTAA TGGAGCATGA 
    AGCTTGCAAG AACATTCCTG TCATAAGTAC GATGTGATGT CTTCTCAAGA 
    TTCGATAAAA ATGGTGTTGA AGTGTATGCT GAGAGGTGCT GCTGATTATC 
    TAATCAAACC AATGAGGAAA AACGAGTTGA AAAATCTATG GCAACATGTT 
    TGGAGAAGAC TGACTGTAAA TTTTTTATTT CCTTTTTTGA GGTTTCCTTG 
    TGTTGAAGTT TGAAACTTGA AAGACTTATT GTCTTTTTTG GTTATGGATC 
    AGTTGCGTGA TGATCCTACT GCTCATGCTC AAAGCTTACC AGCTTCACAG 
    CACAACCTTG AAGATACTGA TGAAACTTGT GAAGATTCCA GATATCATTC 
    AGATCAAGGA AGTGGTGCTC AGGCTATCAA TTACAATGGT CACAATAAGC 
    TGATGGAGAA TGGCAAATCA GTGGATGAAA GAGACGAGTT TAAGGAAACT 
    TTTGATGTGA CAATGGATTT GATTGGTGGA ATTGACAAGC GTCCTGATAG 
    TATTTATAAA GACAAGAGTC GAGATGAGTG TGTTGGTCCT GAGCTTGGAC 
    TTTCTCTGAA AAGATCTTGC TCTGTAAGTT TTGAGAACCA AGATGAAAGC 
    AAGCATCAAA AGCTTAGCCT CTCTGATGCG TCGGCCTTCT CAAGATTTGA 
    GGAAAGCAAG TCAGCAGAAA AAGCCGTCGT TGCTTTAGAG GAGAGTACTT 
    CAGGTGAGCC AAAGACACCA ACCGAATCAC ATGAAAAGTT AAGAAAAGTA 
    ACATCTGATC AAGGAAGCGC CACAACGAGC AGCAACCAGG AGAATATCGG 
    ATCATCAAGC GTAAGCTTCC GTAACCAAGT TCTTCAGTCC ACAGTAACGA 
    ATCAGAAGCA AGATTCACCC ATACCGGTAG AATCAAATCG CGAGAAAGCA 
    GCTAGCAAGG AAGTAGAAGC TGGTTCTCAA AGCACCAATG AGGGGATTGC 
    TGGACAAAGC AGTAGCACAG AGAAACCAAA GGAAGAAGAA AGTGCGAAAC 
    AACGTTGGAG TAGAAGCCAG AGAGAAGCTG CATTGATGAA GTTCCGGTTG 
    AAGAGGAAAG ATCGATGCTT TGACAAAAAG GTTCGGTACC AGAGCAGGAA 
    GAAGCTAGCA GAACAACGTC CTCGAGTGAA AGGCCAGTTC GTGCGAACCG 
    TGAATTCAGA CGCGTCTACA AAATCATGAA GAGCTCTTTC AGTTTTTCCT 
    CTGATTTCTT TTGTTGATTT TATAACAGAA ACTTATTTAG CTTTTGCAAT 
    CTTTAGTGTG CTTTTTTTTT TTTTATGTAT TTGATTGGCT TCTTCTTCTC 
    AGCTAATATG AGATACTGGG GCAACTTTTG T

    Gene models with high sequence identity

    1. AT2G46790.1 [+] show detail - pseudo-response regulator 9
      E-value: 0; Score: 98.88

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam CCT domain 7.9e-20
    HMMPfam Signal transduction response regulator, receiver domain 1.4e-10
    HMMPanther TWO-COMPONENT SENSOR HISTIDINE KINASE BACTERI 6.4e-07
    HMMPanther SENSOR HISTIDINE KINASE-RELATED 6.4e-07
    Gene3D no description 4.9e-12
    superfamily CheY-like 1.9e-15
    ProfileScan CCT domain 15.666
    ProfileScan Signal transduction response regulator, receiver domain 19.069

    See the detailed result >

    AT2G46790.1

    Model type
    Protein coding
    Short Description
    pseudo-response regulator 9
    Curator Summary
    Pseudo-response regulator PRR9. Involved in clock function. PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR9. Interact with TOC1 in a yeast two-hybrid assay. Acts as transcriptional repressor of CCA1 and LHY.
    Computational Description
    pseudo-response regulator 9 (PRR9); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT2G46670.1); Has 67918 Blast hits to 66591 proteins in 3038 species: Archae - 212; Bacteria - 59069; Metazoa - 375; Fungi - 591; Plants - 3099; Viruses - 4; Other Eukaryotes - 4568 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR