F10548

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10548

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10548

Determination of introduced cDNA(s)

  • RAFL08-10-J17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-10-J17 - Resource: pda07906

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-10-J17 - full reading 
    ACTCTCTATA CCTCCTCAAG AAAATCAAAG CAGCAGTTAT GGCCGACGTA 
    GCAACAAAGC ACCCCATGGA AGATGAGGTG AAGAAGACGG AGGCGTCTAG 
    TTTGGTGGGG AAGCTAGAGA CAGACGTGGA GATCAAGGCT TCGGCTGATA 
    AGTTTCACCA CATGTTCGCT GGGAAACCAC ACCATGTCTC CAAAGCAAGT 
    CCAGGCAACA TTCAGGGATG TGATCTGCAC GAAGGCGACT GGGGCACAGT 
    CGGCTCTATC GTCTTCTGGA ATTACGTACA TGATGGGGAG GCAAAGGTGG 
    CGAAGGAGAG GATCGAGGCG GTGGAGCCAG ATAAGAACTT GATCACGTTT 
    AGGGTTATAG AAGGTGATCT GATGAAAGAG TACAAGAGCT TCTTGCTCAC 
    CATCCAGGTG ACCCCTAAGC CTGGAGGCCC TGGAAGTATT GTGCACTGGC 
    ACCTTGAGTA TGAGAAAATT AGCGAGGAGG TAGCTCACCC GGAAACTCTC 
    CTCCAGTTCT GTGTCGAGGT CTCCAAAGAG ATCGACGAAC ATCTCTTGGC 
    CGAGGAAGAG GAGGTGAAGA CACCAGAGAC GCCTAGTTTG GTGGGAAAGC 
    TAGAGACAGA CGTGGAGATC AAAGCTTCCG CTGAGAAGTT CCATCACATG 
    TTCGCCGGGA AACCACACCA TGTCTCTAAA GCATCTCCAG GAAACATTCA 
    AGGTTGTGAT CTTCACGAAG GCGACTGGGG TCAAGTCGGC TCTATCGTCT 
    TCTGGAACTA CGTTCATGAT AGAGAGGCAA AGGTGGCTAA GGAGAGGATT 
    GAGGCAGTGG AGCCGAATAA GAACTTGATC ACGTTTAGGG TTATCGACGG 
    TGATCTGATG AAAGAGTACA AGAGCTTCTT GCTCACGATC CAGGTGACCC 
    CGAAGCTTGG AGGCCCTGGA AGTATTGTGC ACTGGCACCT TGAGTATGAG 
    AAAATAAGCG AGGAGGTAGC TCATCCGGAA ACTCTCCTCC AATTCTGTGT 
    CGAGGTCTCG AAAGAGATCG ACGAACATCT TTTGGCCGAG GAATAGAGGA 
    GTACTACTAC TCTTCGTGTT TGAATTTAAA TGCAATAAAT AAGGACTAAG 
    AGCCATGTCT TTGTGAGATA TATGAATGTG AGTGTGCATC ATGAATGTAT 
    GTATACTAAG ATCGTTTTAC GTTGGCTACT GTAACTTTGA GAAGCAATGT 
    GTAGTAGCTG TGATGAAGCT AGTATAAATA TATAATAAGT ATGTTATATA 
    TGTTTGCTAA TAATAAATGT TTGGACT

    Gene models with high sequence identity

    1. AT1G70830.1 [+] show detail - MLP-like protein 28
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Bet v1-like 1.9e-47
    superfamily Bet v1-like 7.1e-45
    HMMPfam Bet v I allergen 1.3e-62
    HMMPfam Bet v I allergen 7.3e-61
    Gene3D no description 8.9e-48
    Gene3D no description 8.1e-45

    See the detailed result >

    AT1G70830.1

    Model type
    Protein coding
    Short Description
    MLP-like protein 28
    Computational Description
    MLP-like protein 28 (MLP28); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to biotic stimulus, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bet v I allergen (InterPro:IPR000916); BEST Arabidopsis thaliana protein match is: MLP-like protein 34 (TAIR:AT1G70850.3); Has 829 Blast hits to 443 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 827; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR