F10622

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10622

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F10622

Determination of introduced cDNA(s)

  • RAFL09-95-E23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-95-E23 - Resource: pda17919

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-95-E23 - full reading
    CCGGAACGAT TTGTTGGGTT TTCTTCTTTG TACTCTCTCC TCACATTAGC 
    TTTTGTTGGT GGGATTTTTT GAGGATGGTG ATTGCTGCAG CTGTCATCGT
    GCCTTTGGGC CTTCTCTTCT TCATATCTGG TCTCGCTGTC AATCTCTTTC
    AGGCAGTTTG CTATGTACTC ATTCGACCAC TGTCTAAGAA CACATACAGA
    AAATTAACCG GGTGGTTGCA GAAACCTTGT GGTTGGAGCT TGTATGGATA
    GTTGACTGGT GGGCTGGAGT TAAGATCCAA GTGTTTGCTG ATAATGAGAC
    CTTCAATCGA ATGGGCAAAG AACATGCTCT TGTCGTTTGT AATCACCGAA
    GTGATATTGA TTGGCTTGTG GGATGGATTC TGGCTCAGCG GTCAGGTTGC
    CTGGGAAGCG CATTAGCTGT AATGAAGAAG TCTTCCAAAT TCCTTCCAGT
    CATAGGCTGG TCAATGTGGT TCTCGGAGTA TCTCTTTCTG GAAAGAAATT
    GGGCCAAGGA TGAAAGCACT CTAAAGTCAG GTCTTCAGCG CTTGAGCGAC
    TTCCCTCGAC CTTTCTGGTT AGCCCTTTTT GTGGAGGGAA CTCGCTTTAC
    AGAAGCCAAA CTTAAAGCCG CACAAGAGTA TGCAGCCTCC TCTGAATTGC
    CTATCCCTCG AAATGTGTTG ATTCCTCGCA CCAAAGGTTT CGTGTCAGCT
    GTTAGTAATA TGCGTTCATT TGTCCCAGCA ATTTATGATA TGACAGTGAC
    TATTCCAAAA ACCTCTCCAC CACCCACGAT GCTAAGACTA TTCAAAGGAC
    AACCTTCAGT GGTGCATGTT CACATCAAGT GTCACTCGAT GAAAGACTTA
    CCTGAATCAG ATGACGCAAT TGCACAGTGG TGCAGAGATC AGTTTGTGGC
    TAAGGATGCT CTGTTAGACA AACACATAGC TGCAGACACT TTCCCCGGTC
    AACAAGAACA GAACATTGGC CGTCCCATAA AGTCCCTTGC GGTGGTTCTA
    TCATGGGCAT GCGTACTAAC TCTTGGAGCA ATAAAGTTCC TACACTGGGC
    ACAACTCTTT TCTTCATGGA AAGGTATCAC GATATCGGCG CTTGGTCTAG
    GTATCATCAC TCTCTGTATG CAGATCCTGA TACGCTCGTC TCAGTCAGAG
    CGTTCGACCC CAGCCAAAGT CGTCCCAGCC AAGCCAAAAG ACAATCACCA
    CCCAGAATCA TCCTCCCAAA CAGAAACGGA GAAGGAGAAG TAAAAACTGG
    TTCTCACAGA TCCAAACATC AAACACAACA AGAAGAAGCG CGTGTCAGTT
    TTGTTATAAG AAACAGAAAA CCAAAAAAAA AAGACATCCA AATGAAAAAT
    CCCTTAATAT TATCAACTCC GTTTTGTTCA GCTACTATAT TACTACTACT
    ACTACTACGC AGCCTATGTC TCTTAGTCGA TTGATGTATA GGGTCATGAT
    CAAATCAACG ATTTAATCCC TATAGTCCCT TGGGATTTTT TTTCTCAAGT
    GCATAGGCCT TGTATAACTT TCTATTTTTA GATTGGAATT TGGGATTGAT
    AAAAAAAA

    Gene models with high sequence identity

    1. AT3G57650.1 [+] show detail - lysophosphatidyl acyltransferase 2
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1.3e-152
    HMMPanther 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1.3e-152
    HMMSmart Phospholipid/glycerol acyltransferase 3.5e-22
    superfamily Glycerol-3-phosphate (1)-acyltransferase 6.7e-06
    HMMPfam Phospholipid/glycerol acyltransferase 3.3e-20

    See the detailed result >

    AT3G57650.1

    Model type
    Protein coding
    Short Description
    lysophosphatidyl acyltransferase 2
    Curator Summary
    Encodes an endoplasmic reticulum localized protein with lysophosphatidyl acyltransferase activity.
    Computational Description
    lysophosphatidyl acyltransferase 2 (LPAT2); FUNCTIONS IN: 1-acylglycerol-3-phosphate O-acyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: lysophosphatidyl acyltransferase 3 (TAIR:AT1G51260.1); Has 1646 Blast hits to 1643 proteins in 516 species: Archae - 0; Bacteria - 639; Metazoa - 536; Fungi - 213; Plants - 138; Viruses - 2; Other Eukaryotes - 118 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR