F10706

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10706

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10706

Determination of introduced cDNA(s)

  • RAFL06-86-E24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-86-E24 - Resource: pda17263

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-86-E24 - full reading 
    CCCGGAAGCA GAGGATAGAC AGAGAGAAAA GGGAAAATTA CCAGACAAGA 
    GTTCTTCTTT CTTCTCTCTG CCTGCTTCTT TTTCCTCTCT TTTCTCTCTC 
    TCTCTCTTTC TTTGTGAAAA TCTAGAAGAA GAGAAAGCTA CAAAAATCTC 
    AACATCGAGG TAAGAGTTTT GGCTACAGAG CAACCATGCT AACTTGCGCC 
    TTCTCCCAAA ATCTTATCCA CTAATCTCGG TAAGGAAAGT GATGTTGGCA 
    AAATGGTGAA GAAAGGAAGT TGGTTTTCTG CTATCAAAAG GGTTTTTACT 
    CCACATTCCA AAGAGAAGCT AGCCAATGAA CCAGAGAGAA AGAGTGGCAA 
    AGAAAAGAAG AAGAAAGGTT TTGGGAAGCT AAGGCATGGC GAGACCAATT 
    CATTTCTTCC CATCTTCAGA GAGCCTAGTA GTATCGAAAA GATCTTGGGC 
    GAGGCTGAGA GAGATCACAA TCTTGTCTTC AGGCCTCCTA CTCCTGATCG 
    ACCAAATCCA TATTCAGCCT CTCCTCCTCC GAGGCCTGCT TCTCCTCGGG 
    TTGCTTCCCC AAGACCAACT TCTCCAAGAG TTGCCTCACC ACGAGTCCCT 
    TCTCCAAGAG CTGAAGTTCC AAGAACCCTT TCACCAAAGC CTCCTTCTCC 
    AAGAGCTGAA GTTCCAAGAT CCCTTTCACC AAAGCCTCCT TCTCCAAGAG 
    CTGACCTTCC AAGATCACTT TCGCCAAAGC CCTTTGATCG ATCGAAGCCA 
    TCATCAGCCT CTGCTAATGC CCCTCCTACT CTTAGGCCTG CTTCTACTCG 
    AGTTCCTTCT CAGAGAATTA CACCTCACAG TGTTCCTTCT CCAAGACCAA 
    GTTCACCAAG AGGTGCCTCC CCACAAGCCA TCTCTTCAAA GCCGCCTTCT 
    CCAAGAGCAG AGCCACCAAC ATTGGACACT CCAAGACCTC CCTCTCCAAG 
    AGCTGCTTCT CTAAGAGCAG ACCCACCAAG ATTGGATGCT GCACGACCCA 
    CCACGCCTAG GCCTCCTTCT CCACTAGCAG ACGCACCAAG ATTGGATGCT 
    CCACGACCCA CTACGCCTAA GCCGCCTTCT CCAAGATCAG ACCCGCCAAG 
    ATTGGATGCT CCAAGACCCA CTACGCCTAA GCCCCCTTCT CCAAGATCGG 
    TTTCTCCTAG GGCTGTGCAG CGGCGGGAGA TTGTTTATAG ACCAGAGCCA 
    ACGCTTCCGG TCCAACATGC TTCTGCAACA AAGATTCAAG GAGCTTTCAG 
    AGGTTACATG GCAAGGAAGA GTTTCAGAGC TCTCAAAGGT CTAGTCAGAC 
    TTCAAGGTGT GGTGAGAGGA TACAGCGTGA AGCGGCAGAC GATAAATGCA 
    ATGAAGTACA TGCAGCAAGT GGTCCGTGTT CAATCCCAAA TCCAGTCACG 
    TCGCATCAAA ATGTTGGAAA ACCAAGCCCA GGTAGAGAAA GATGAAGCCA 
    AATGGGCTGC GTCTGAAGCT GGTAATGATA ATTGGGATGA CAGTGTGCTG 
    ACAAAAGAGG AAAGGGATTC AAGATCACAA AGAAAGACTG ACGCAATCAT 
    CAAGAGAGAA AGATCCATGG CCTATGCATA TTCTCGCAAG TTGTGGAAGA 
    ACAGTCCTAA GTCTACTCAG GACAATCGTT CTTTCCCTCA ATGGTGGAAC 
    TGGGTGGACC GGCAGAATCC TCTTGCTAGT CCTGCACCGA GCTATAGCCA 
    ACCACAAAGA GATTTCAGGC TAACACCATC AAGACTGTGC CCAAGTCCTC 
    TGTCTCAGTC AAGCAAACAA CACCATATCA GGCTTGACAA CCACTTTGAC 
    ACTTCAACAC CCAGATCGTC AAGATCCACT TTTCACACTC CCTCCAGACC 
    CATCCACACA GGGACATCAA GATACTCAAG AGGAAGACTA AGAGGTCAAG 
    ATTCTCCTTT CAAGGATGAT GATAGCCTCA CAAGCTGCCC TCCATTCCCT 
    AGCTACATGG CTCCAACAGT CTCTGCCAAA GCAAAAGTTA GACCAAACAG 
    CAATCCAAAG GAGAGAGTGA TGGGTACACC AGTCAGCGAG AAGAGGAGAA 
    TGTCGTATCC CCCCACGCAA GATACGTTTA GATGGAACAA AGGGTCATTG 
    GTCATGAGCA ACAGCAGCAG CCACAGAGGT CCTGGTTCAC CTGGAGGTGT 
    GGTTCTTGAG AAGCACAAGA CACTTAAATC AGTAGGAAAT TTGAGCATTG 
    GTTCCACTGC CTCCATGGCA ACAACAGTTG GGAGAAAGGA ATTTAACAGA 
    TTTGTGTGAT TTCTTTTGAT TTGAACATTT TTCTTTGGGT TGTGTTGATT 
    TTGAGTGTTG TAACATAATA AAAGGTAAAA CAGAAAAACA AAAAAAACCG 
    GAGGATTTGG TTTGAAGTAG AACTCTTAGA AATGATATGA GCATTAGACT 
    TGGTAATACT AATGAAAAAA GTTGACACTT GAAGCAAATT CACAAGGGTA 
    AAATGTATCT TACGGTTTTT AATGAAAGCT AAAGAGACTG TAGGGCTTCA 
    ACAAAAAAA

    Gene models with high sequence identity

    1. AT2G43680.3 [+] show detail - IQ-domain 14
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart IQ calmodulin-binding region 8.2e-05
    Coil coiled-coil 0
    HMMPfam IQ calmodulin-binding region 2.9e-05
    ProfileScan IQ calmodulin-binding region 10.658
    ProfileScan IQ calmodulin-binding region 6.888

    See the detailed result >

    AT2G43680.3

    Model type
    Protein coding
    Short Description
    IQ-domain 14
    Computational Description
    IQ-domain 14 (IQD14); FUNCTIONS IN: calmodulin binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 13 (TAIR:AT3G59690.1); Has 118926 Blast hits to 59821 proteins in 2152 species: Archae - 194; Bacteria - 23690; Metazoa - 41386; Fungi - 20516; Plants - 13347; Viruses - 3789; Other Eukaryotes - 16004 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR