F10712

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10712

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F10712

Determination of introduced cDNA(s)

  • RAFL06-81-H15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-81-H15 - Resource: pda03805

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-81-H15 - full reading 
    AAATAACTTA AAGAGTTCAA CAATGGCGAA TCATCCACTA TCTTCTTCTC 
    GATCCAACCG ACCTTTTTTC GTCAGATCAC TTGCTGGACA CACCTCAAAT 
    CTAATAATTC CTGATGAGTT TTTCACTGCT CACTTAGAGG GTAAAACTGG 
    CTTAACGAAA TTGAAACTGA CTTCTGATGC TTCGGATAGA ATCTGGGATG 
    TGAGACTGAA CGGCCGGAGA TTCGCCGGCG GCTGGGATGA TTTCTCCGCC 
    GCACACTGTC TTCGAGACGA CGACGTTTTG GTTTTCAGAC TCGACGTGAA 
    GATGGTTTTC CACGTCACAC CTTCCGGACG CAGTTTCTCA CAGATACGTA 
    CATCTTCTAG CTCCGGCGAC TACGACAGTG ATGATGATGA TGATGAAGCA 
    GGGGACGATG ATTCAGATTC GAAGAACATT TCGTTGAAGA AGAAATCAAG 
    ATTTGAAGCA GAGTCTTCTT CATCGGAAAA ATATTGTCTT CTCGGCCTCA 
    CTGCTTCCAA CCTACGCCTA AATCGAGTGA GTTTTACAAA ACATTTTTCG 
    AGAGCAAATG GTTTGACGAA GAGATGTTGT ATGATTGATC TAATGAATCT 
    AAGTGGGGAA TCATGGACTC TGGGTCTGCG ACACAACAAA AGAACTGGTC 
    AGGCTTTTAT CCGTGGACGC TGGAGAAGTT TCTGCCATGC AAATGAGCTG 
    AAACCCGGAT CGTTCTACCG GTTTAAGCTT GTCCGGAATG GGACAAGGCC 
    TTTGCTACAA TTGTGTTTTA AAGTTATTCC ACAAGGAAAC TGTTCCAATT 
    CCAAAGCAAA TGGAAAAGCT AATGTTTCTG AAAAGTATAG CAGGGAAGAT 
    GGGAGTGCTT CAACGAAGCA GAACAAGTTT CTGACAGTAA CCTTGAAGCA 
    TTACATGATC CAGTCAGGGC AACTTCGTCT CCGGAGATCA TTTGTGAGGG 
    AGAACGGGAT CAAGGAGGCT GAAGAGATAA TTCTAGTGGA CAAAAATGGA 
    GTAGAGTGGC CATCCTATGT ATCTTCTTCC AAACAACGAA GAGAGTTTTA 
    CATGGCACAT GGTTGGATTA GGTTTTGTGA AGCCAATAAG TTAAAGACGG 
    GAGAGACCTT CACGTTGGAG TTTGTTCGAG GAGAAGGCAC AACTCCTATG 
    CTCAAGTTCT GCTCCGAGGC CAAGATAGAG CAAGAAGAGG CTCCAGAAGA 
    GAGGGGGACT CCGTTACCAA AGAGAGCTCG AGTGTCTGCA GAAGTAGGAC 
    ACTCTCGTCG CACTCAGGCA CCAAACAAAT CCAGTGACGA TCCAAAAATC 
    TTGCAGCGCA AGCAACCACT TCAACCCTGC TCATTCTCTG ATCAAGCGAA 
    AAAGGTGAAA CAGAGTATTG TAAACATTCT AACTGGTATA AAACGGTTTC 
    GGTCAGAGCT TGAGTTAAAG GAGCGGAATT TAGAAGCTGC GCTGCTGGAA 
    ATCGACGCCT TAGGGGATAA AGTATCGGAA ATCAACAAAA TCCTCAAGTA 
    ATCATCAAGT CTAGAAGGGA AGTGAAGATT AGGAAATGGA ACATGAACTT 
    TTGCAAATCT TGTTAGTATC TGCCATCTGG AACTCGTTCA ACAATCAAGA 
    CAAGTAGTTT CTTTAGTAAA TGATATATGA TTTACGTGTT TGTGAAAATC 
    GAAACTCTGT AGTAAAGCTG ATTTCTAAAT AGCCTTTGGA CGTGAGATTG 
    TTTAAAGGGA TCAGTTTGAT TGTCTAACGA TAAGATGTGT GCTTGTGGGA 
    TGATTGGTAG GTAGTAGAAA AGTGAATTGA GAATCCAAAA AAAATAATAA 
    TTAAGGTCAA AAAAAAAAAA AAAA

    Gene models with high sequence identity

    1. AT4G31620.1 [+] show detail - Transcriptional factor B3 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam Transcriptional factor B3 7.9e-12
    HMMPfam Transcriptional factor B3 1.6e-15
    HMMPfam Transcriptional factor B3 1.2e-19
    Gene3D no description 8.4e-10
    ProfileScan Transcriptional factor B3 11.378
    ProfileScan Transcriptional factor B3 11.899
    ProfileScan Transcriptional factor B3 14.113

    See the detailed result >

    AT4G31620.1

    Model type
    Protein coding
    Short Description
    Transcriptional factor B3 family protein
    Computational Description
    Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT4G31615.1); Has 320 Blast hits to 174 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 320; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR