F10725

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10725

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10725

Determination of introduced cDNA(s)

  • RAFL09-93-L12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-93-L12 - Resource: pda09050

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-93-L12 - full reading 
    AAATCAATCA GAGAGAGAGC TTCTGAGACA TAAACATCAA TTCAAATCGA 
    CGCAAGCAAA GAAAGCAAAA TGGAAAATGG AAGCGGGAAG GTGTTGAAGC 
    CGATGGACTC AGAGCAATTG AGAGAGTACG GACATCTGAT GGTTGATTTC 
    ATTGCTGATT ACTACAAAAC CATCGAAGAT TTCCCTGTTC TTAGCCAAGT 
    TCAGCCTGGT TATCTTCATA AGCTTTTGCC TGATTCTGCA CCTGACCACC 
    CTGAAACTCT GGACCAAGTT CTTGATGATG TTCGAGCAAA GATATTGCCT 
    GGAGTAACGC ATTGGCAAAG CCCGAGTTTC TTTGCTTATT ATCCTTCTAA 
    CAGCAGTGTT GCTGGGTTCT TGGGTGAGAT GTTGAGTGCT GGTCTTGGCA 
    TTGTTGGTTT TAGTTGGGTT ACTTCTCCAG CTGCCACAGA GCTAGAAATG 
    ATCGTTCTTG ATTGGGTTGC TAAACTTCTC AACCTACCCG AGCAGTTTAT 
    GTCCAAAGGA AATGGAGGTG GAGTTATACA AGGGTCAGCT AGTGAAGCTG 
    TTCTTGTTGT TCTGATTGCT GCACGCGACA AGGTTTTAAG AAGCGTTGGC 
    AAAAACGCGC TTGAGAAGCT CGTTGTCTAC TCCTCTGACC AGACTCATTC 
    AGCTTTACAG AAGGCTTGCC AGATTGCTGG AATCCATCCA GAGAATTGCA 
    GGGTGCTGAC AACAGACTCT TCTACAAATT ACGCTCTGCG TCCAGAATCG 
    CTTCAAGAAG CTGTTTCTAG GGATCTTGAA GCTGGATTGA TTCCATTCTT 
    CTTATGTGCT AATGTTGGGA CCACTTCTTC AACCGCAGTT GATCCATTAG 
    CTGCACTGGG GAAGATTGCT AATAGCAATG GAATTTGGTT TCACGTGGAT 
    GCAGCATATG CTGGAAGTGC CTGTATATGT CCAGAGTATC GGCAATACAT 
    TGACGGTGTA GAAACTGCAG ACTCTTTTAA CATGAATGCT CACAAATGGT 
    TCCTCACTAA CTTCGATTGT TCCCTTCTTT GGGTAAAGGA TCAAGATTCT 
    CTTACATTAG CTCTTTCAAC AAATCCAGAG TTTCTCAAAA ACAAGGCCTC 
    TCAGGCAAAC TTGGTTGTTG ATTACAAAGA TTGGCAAATC CCTCTCGGAC 
    GAAGATTCAG ATCATTGAAA CTATGGATGG TTTTAAGGCT CTATGGATCT 
    GAGACCTTGA AGAGCTATAT AAGAAACCAT ATCAAACTGG CTAAAGAATT 
    CGAACAACTT GTCTCTCAAG ATCCTAACTT CGAGATTGTC ACACCTCGGA 
    TCTTTGCTCT TGTCTGTTTC CGCCTCGTGC CTGTGAAAGA CGAAGAAAAG 
    AAGTGTAATA ACCGAAACCG TGAACTCCTA GACGCAGTGA ACTCTTCAGG 
    GAAACTCTTC ATGTCGCACA CTGCTTTATC GGGGAAAATC GTACTACGTT 
    GCGCAATAGG AGCGCCATTG ACGGAGGAGA AGCACGTTAA GGAGGCGTGG 
    AAGATTATTC AGGAAGAAGC ATCTTACTTG CTTCACAAGT AAATATGATA 
    AAACAGTAAA AGAATAAAAC GGTTTTTGCC AACAAAACGA AGCACTTCGG 
    TTTGGTTTGG TTTAATTTGA TAATATAATA ATAAAACAGA AAATTGCTTA 
    AGTAAGACTT ATCAACTTCG GTTTGATTTC GGTACACTTT AGTAAGGTGA 
    TCTTTCTTGT GTGTATTTTA TCCTCTATTT TTTTTTTTAC CAATTGTGTG 
    TATTTTATCT ATTTGGTTTG GGTTTATTTT GTGGTTAATT AATGTAAGCA 
    ATGATAATAA AATGTTCTAT TTTAAGAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT2G20340.1 [+] show detail - Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Pyridoxal-phosphate binding site 0
    FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
    FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
    FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
    FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
    FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
    FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
    FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
    FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
    FPrintScan Aromatic-L-amino-acid decarboxylase 1.2e-77
    superfamily Pyridoxal phosphate-dependent transferase, major domain 3.3e-148
    Gene3D no description 8.5e-32
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 8.2e-95
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 2 1.4e-31
    HMMPfam Pyridoxal phosphate-dependent decarboxylase 5.2e-146
    HMMPanther AROMATIC AMINO ACID DECARBOXYLASE 2.6e-126
    HMMPanther Pyridoxal phosphate-dependent decarboxylase 2.6e-126

    See the detailed result >

    AT2G20340.1

    Model type
    Protein coding
    Short Description
    Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
    Computational Description
    Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity, tyrosine decarboxylase activity; INVOLVED IN: response to wounding, cellular amino acid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aromatic-L-amino-acid decarboxylase (InterPro:IPR010977), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal-phosphate binding site (InterPro:IPR021115), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: L-tyrosine decarboxylase (TAIR:AT4G28680.1); Has 5452 Blast hits to 5431 proteins in 1792 species: Archae - 99; Bacteria - 1888; Metazoa - 2300; Fungi - 264; Plants - 262; Viruses - 5; Other Eukaryotes - 634 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR