F10729

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10729

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10729

Determination of introduced cDNA(s)

  • RAFL05-12-O17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-12-O17 - Resource: pda07288

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-12-O17 - full reading 
    AACTCCGGCA CGAGTCTCGT TCTCTTCTCT TTACCGCCGT CATCTAGGTC 
    TGCTAATATC AAGTGAAGGA GCTCGAAATG GCCACAGTTC CAGGACAGTT 
    GATCTGGGAG ATCGTGAAGA GAAACAACTG TTTCTTGGTG AAGCAATTCG 
    GTAGAGGTAA TGCCAAGGTT CAGTTCAGCA AAGAGAGCAA CAACCTCGTC 
    AACATCAACT CGTACAAGCA CTCTGGTTTG GCCAACAAAA AGACAGTGAC 
    CATTCAGGCG GCTGGCAAGG ACCAAGGTGT TGTACTCGGA ACCACCAAGA 
    CTAAGAGACA AAACAAGCCT AAGCTCTCTG TTAACAAGTC TATCCTCAAG 
    AAGGAGTTCT CGAGGATGAG TAAAGTTGTT GCCAATCAGG TAGTGGACAA 
    CTACTACAGG CCTGATTTGA AGAAAGCAGC ACTTGCTAGG CTTAGCGCTA 
    TCAGCAAAGG TCTTAGAGTA GCCAAGTCGG GTCCCAAGAG GAGAAACAGA 
    CAGGCTTGAA GAATCCACTA CTGAATATCT TGTTTACTTT TTCTAAAAAG 
    CTTGTTGTGA GCCATTAAGA GTTTCTGACA GCAGCTTGTA GGTTAAGATT 
    TTTCCTGAAC AGCTCAAGGA TTGTACCACC ATCCTTTTTT CACTAAATGA 
    TATTAAAACT

    Gene models with high sequence identity

    1. AT4G29410.1 [+] show detail - Ribosomal L28e protein family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L28e 3.4e-50
    HMMPanther Ribosomal protein L28e 8.5e-52

    See the detailed result >

    AT4G29410.1

    Model type
    Protein coding
    Short Description
    Ribosomal L28e protein family
    Computational Description
    Ribosomal L28e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672); BEST Arabidopsis thaliana protein match is: Ribosomal L28e protein family (TAIR:AT2G19730.3); Has 531 Blast hits to 531 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 284; Fungi - 94; Plants - 107; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR