F10834

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10834

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F10834

Determination of introduced cDNA(s)

  • RAFL14-01-C19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-01-C19 - Resource: pda18017

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-01-C19 - full reading 
    TGCGGAAGGT GTTACCGGAT TTAGGAGAGA TAAAGAAGGT TTCTTCATTT 
    AGAAACAGAG ACACGAAGTT TGCGATGATG ATGATGATTC AGAGAAGAGG 
    AGGTGAGAGA CAAGACTCGT CGGCACCGGC GTACAACGTT GTCCATAAGT 
    TGCCTCACGG AGACAGTCCT TATGTCCGAG CGAAGCATGT TCAGTTGGTG 
    GAGAAAGATG CAGAAGCAGC GATAGAGTTG TTTTGGATAG CGATTAAAGC 
    GAGAGATAGA GTTGATAGTG CTCTTAAAGA CATGGCCTTG TTAATGAAAC 
    AACAGAACAG AGCTGAAGAA GCCATTGACG CTATTCAATC CTTTAGAGAT 
    CTTTGTTCAA GACAAGCTCA AGAGTCATTA GACAATGTCC TCATCGATCT 
    ATATAAGAAA TGTGGGAGAA TAGAAGAGCA AGTTGAGTTA TTGAAGCAAA 
    AGCTTTGGAT GATATATCAA GGAGAAGCAT TCAATGGCAA ACCAACAAAG 
    ACTGCGAGAT CTCATGGCAA GAAGTTTCAG GTCACCGTCG AGAAGGAAAC 
    CTCTAGGATC TTGGGGAACT TGGGATGGGC TTATATGCAA CTAATGGACT 
    ATACAGCAGC TGAAGCTGTG TATCGGAAAG CTCAATTGAT AGAGCCAGAT 
    GCAAACAAGG CTTGCAATTT ATGCACATGT CTCATCAAGC AAGGGAAGCA 
    CGATGAGGCG AGGTCGATTC TCTTTCGTGA TGTACTAATG GAGAACAAAG 
    AAGGGTCTGG TGATCCGAGG TTGATGGCTC GGGTTCAAGA GCTATTGAGT 
    GAGCTAAAGC CACAGGAAGA AGAAGCAGCG GCTTCTGTGT CTGTGGAATG 
    TGAAGTTGGT ATAGATGAGA TAGCGGTTGT CGAAGGACTT GATGAGTTTG 
    TGAAGGAATG GAGGAGGCCT TATAGGACAA GAAGACTTCC GATTTTCGAA 
    GAGATCTTAC CACTGAGAGA TCAATTGGCT TGTTGATGAT TCTCTGTGTG 
    TTTGGATTGA TGTTTGAATA CTGAATAGGA ACCTTTTTGG GTAGAAGAAT 
    GTAGTGAGTG AATAGAGTTT ACCTCTTGTA AGCTTTTTCG GGTGTCGTTG 
    TCTGTTATTA CCGCAATGTC AAATGATCTC ATTCCAAAAG TAATTCCAAA 
    AGTAGTTGAT GCTAAAAAAA AAA

    Gene models with high sequence identity

    1. AT1G04770.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 0; Score: 99.83

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Tetratricopeptide TPR-1 1.4e-05
    ProfileScan Tetratricopeptide repeat 9.175
    ProfileScan Tetratricopeptide repeat-containing 9.16
    HMMSmart Tetratricopeptide repeat 0.0031
    superfamily TPR-like 1.8e-16
    Gene3D Tetratricopeptide-like helical 5.3e-08

    See the detailed result >

    AT1G04770.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G48850.1); Has 226 Blast hits to 224 proteins in 29 species: Archae - 0; Bacteria - 22; Metazoa - 1; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR