F10901

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10901

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10901

Determination of introduced cDNA(s)

  • RAFL06-75-A03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-75-A03 - Resource: pda03544

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-75-A03 - full reading 
    TACAAGACTG ATGTTGACAA CAAGAAGGTC TTCTATTCAG ATCTCAATGG 
    TTTCCAAATG AGCAGGAGAG AAACTTATGA TAAGATCCCT CTTCAAGGAA 
    ACTACTACCC AATGCCATCT CTCGCATTTA TCCAAGGATC CAATGGTCAG 
    AGATTCTCCG TGCACTCTCG TCAATCTCTC GGTGTTGCAA GCCTCAAAGA 
    GGGTTGGTTG GAGATTATGC TGGACAGACG GTTGGTTCGT GATGACGGAC 
    GGGGTCTAGG GCAAGGTGTG ATGGATAACC GCGCAATGAC CGTGGTATTT 
    CACCTTCTTG CGGAATCTAA CATTTCTCAA GCAGACCCTG CTTCCAACAC 
    TAACCCGAGG AACCCTTCGC TTCTCTCTCA CCTCATAGGT GCTCACTTAA 
    ACTACCCCAT AAACACATTC ATTGCCAAGA AACCGCAAGA CATATCTGTG 
    CGTGTTCCAC AATACGGTTC CTTTGCTCCT TTAGCCAAAC CGTTACCATG 
    TGACCTCCAC ATTGTAAATT TCAAGGTTCC TCGTCCATCC AAATACTCTC 
    AGCAATTGGA AGAAGACAAG CCAAGGTTCG CTCTTATCCT CAATAGACGA 
    GCTTGGGATT CAGCTTATTG CCATAAAGGA AGACAAGTAA ACTGCACAAG 
    CATGGCTAAT GAACCAGTAA ACTTTTCCGA CATGTTCAAA GATCTTGCAG 
    CTTCAAAGGT AAAACCAACT TCACTGAATC TCTTGCAAGA AGATATGGAG 
    ATTCTTGGGT ACGATGACCA AGAGCTACCT CGAGATAGTT CACAGCCACG 
    GGAAGGACGT GTCTCGATCT CTCCCATGGA AATACGAGCT TATAAGCTTG 
    AACTGCGACC TCACAAGTGA AATACACACA CTTAAGACTG AACGTTGACT 
    ATTTATTGGC TGGTATGGCC TCAAACGATC GTTGACTATA AGAGGTTGGG 
    CTCAGAATCG GCTTCTTCTT GTTCACAGAA GCTGTGCCGG GAACATGAAC 
    TGTCAAAAAG AGAGAGTAGA AGCTGGAGCA TCTCTGTGTC CATGTAAAAC 
    TACTGTAAGG CATTAGTTTT TTTTGGCCGG TTCTTTTTGA GACAAGTTAT 
    ATTAATTAGT TTTACCATTT TGCCTGGGAT TATTATGTTG TGTGTATATA 
    AACTATATGT TATACACATT CGATTGAATT GGAGTGCAAA AGATATGGTC 
    CT

    Gene models with high sequence identity

    1. AT5G14950.1 [+] show detail - golgi alpha-mannosidase II
      E-value: 0; Score: 99.92

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 2.4e-46
    superfamily Glycoside hydrolase-type carbohydrate-binding 1.6e-64
    HMMPanther MANNOSIDASE ALPHA CLASS 2A 4.1e-133
    HMMPanther ALPHA-MANNOSIDASE 4.1e-133
    HMMPfam Glycosyl hydrolases 38, C-terminal 9.2e-48

    See the detailed result >

    AT5G14950.1

    Model type
    Protein coding
    Short Description
    golgi alpha-mannosidase II
    Curator Summary
    Encodes a golgi alpha-mannosidase, an enzyme responsible for the formation of major complex-type N-glycans.
    Computational Description
    golgi alpha-mannosidase II (GMII); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G66150.1); Has 2033 Blast hits to 1987 proteins in 497 species: Archae - 20; Bacteria - 870; Metazoa - 708; Fungi - 131; Plants - 147; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR