F10919

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10919

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10919

Determination of introduced cDNA(s)

  • RAFL06-16-O18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-16-O18 - Resource: pdz87624

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-16-O18 - 3 prime EST 
    GAAAATCAAA GGTCTATCAG TTGATTGGAA TAGAGAATAT AATGATGTCT 
    TACAAGACAA ACAGAGGTAG AGACAGAGTT TAACCACGTC GTACACAAGC 
    AATTCACTTA GGCCACAATT CAATCTTTCA AGAAGAAGGA GCCTTGGTCT 
    TAGTGTAGTA CCGAATGCCG AAAGCCAAGC CTAAGATTAG AAGTGGAACA 
    AGGAACTGAA GGAGCTTAAT AACAAAATCC GAGCTCTTAT CCTGAGTAGC 
    CACGGCTTTC GTCGACGTAG GAGGCACAAA CTTAGCTTTA ACCGGCACAG 
    TAGCTGTGTC AATATCACCC ACATAGTACT CATCTAGCAT GGCTTTCGCA 
    GTCGAACTAT GTCCCACATC CTCGAAATCA TCGGTCGCAT CTTTCCCTGT 
    AGAAGTCAAG ATAACCTCAT CACCACCAGG ATGATCATCC AA

    Gene models with high sequence identity

    1. AT5G48810.1 [+] show detail - cytochrome B5 isoform D
      E-value: 0; Score: 100.00

    AT5G48810.1

    Model type
    Protein coding
    Short Description
    cytochrome B5 isoform D
    Curator Summary
    Encodes a cytochrome b5 isoform that localizes to the ER. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro and the protein appears to be subject to glycosylation.
    Computational Description
    cytochrome B5 isoform D (CB5-D); FUNCTIONS IN: heme binding; INVOLVED IN: defense response to bacterium; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: cytochrome B5 isoform B (TAIR:AT2G32720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR