F10923

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10923

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10923

Determination of introduced cDNA(s)

  • RAFL05-11-L02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-11-L02 - Resource: pda02516

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-11-L02 - full reading
    AATTTTCAAC AAGCAAAGTT CATGATGGGG AATAAGCGAA ATCTCGGATT 
    TGTGATCTTC TTCTGGGCTC TGGTGGTTGC AGTAGTAGCC ACGGCCATCG
    AGCATCGTCG CAATGAGAGG ACTAAAGGCG TCAATGGTCT TGACAAGATC
    ATCATCCGCG ACCGTCGTGG CCGATCTGCT GAGGTTTACT TGTATGGAGG
    TCAAGTCAGT TCTTGGAAAA ATGAGAATGG AGAGGAGTTA CTTGTTATGA
    GTAGCAAGGC TATATTCCAG CCTCCAACAC CGATTCGTGG AGGAATTCCA
    GTATTGTTTC CGCAATACAG TAACACCGGT CCACTTCCCT CACATGGATT
    TGTAAGACAG AGGTTCTGGG AGGTTGAGAC TAAACCACCT CCTTTGCCAT
    CACTTTCTAC TGCTCATGTT GACCTGATCG TAAGATCATC CAATGAGGAT
    TTGAAGATCT GGCCGCATAA GTTTGAGTAT AGACTGAGAG TAGCATTGGG
    ACATGATGGA GATTTGACGT TAACATCTCG TGTTAAGAAT ACTGATACAA
    AACCATTTAA CTTCACATTT GCTCTTCACC CCTACTTCGC TGTTTCCAAT
    ATCAGTGAAA TCCATGTCGA AGGATTACAC AACTTGGATT ACCTTGACCA
    ACAAAAGAAC AGAACACGTT TCACTGATCA TGAGAAGGTT ATAACTTTCA
    ATGCTCAACT TGACAGGTTG TACCTAAGCA CTCCAGATCA ACTAAGAATC
    GTGGACCATA AGAAAAAGAA GACTATTGTT GTACACAAGG AGGGACAAGT
    TGATGCCGTG GTGTGGAATC CATGGGATAA GAAAGTATCC GATTTGGGAG
    TTGAAGACTA TAAGCGTTTT GTAACGGTGG AAAGCGCGGC TGTCGCGAAA
    CCGATCACAG TGAACCCCGG CAAAGAATGG AAAGGAATAC TCCATGTTTC
    TGTGGTTCCA TCAAATCGGA AAGCTTGACC CTATAAAAGT CTTGCATTCA
    TCATCCTCAT CCTTTAAAAA AAAAACTTAA AACTGTCTTT ATTAAAGTAT
    ACTTAATGTT CCCGAGAGAC ATCACATGGT GAACACAAAG TTAGTTGGGT
    TCCAAACTGG ACTCTTGACC AGTTTTATTG TTTTGTAACT TTAGCATTCA
    TGAATAAAAA AAGTGCGTTA ATTG

    Gene models with high sequence identity

    1. AT4G25900.1 [+] show detail - Galactose mutarotase-like superfamily protein
      E-value: 0; Score: 99.91

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Aldose 1-epimerase 3.9e-62
    HMMPanther APOSPORY-ASSOCIATED PROTEIN C-RELATED 6.6e-129
    superfamily Glycoside hydrolase-type carbohydrate-binding 1.1e-73
    Gene3D Glycoside hydrolase-type carbohydrate-binding, subgroup 1.6e-74

    See the detailed result >

    AT4G25900.1

    Model type
    Protein coding
    Short Description
    Galactose mutarotase-like superfamily protein
    Computational Description
    Galactose mutarotase-like superfamily protein; FUNCTIONS IN: carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity; INVOLVED IN: galactose metabolic process, carbohydrate metabolic process; LOCATED IN: cell wall, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Aldose 1-epimerase (InterPro:IPR008183), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718); BEST Arabidopsis thaliana protein match is: Galactose mutarotase-like superfamily protein (TAIR:AT5G57330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR