F11001

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11001

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F11001

Determination of introduced cDNA(s)

  • RAFL08-13-O12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-13-O12 - Resource: pda04794

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-13-O12 - full reading 
    CTTTTTAGAA AATCCTTTTT TATAACAAAT AATTCCTCTG CTTCTTCTTC 
    TTCTTCGTTT ATTTCACCTT TTTTGGTTTC TTTAGCTCAG AAAAAGCCCA 
    TTCTTTTTTT CTATTCTTGT TTATTTTAAT CATACTGTGC GTTTCTACAA 
    AGTTTGTTCC TTTCTTCTTC AACTCTCTCA CTCACAGTCA CAGAGATCTG 
    TTTCTTTTCT TTTTTTGCTT TCACTCTTCT CTTCCAGTGA GAGAGAGTGA 
    GAGAAAATGG TGAAGCTTTT GTTAGTAGGG TTTGTTGTGG CTGGTATAAT 
    ACTGGGAACT CAAGCAAATG AATATTTAGA TTTCAATGTG ACAGAAATAG 
    ATCGCATTGA GGAATTAGAG TTTGGATTTT CCAAATATAG CTCCAATTTG 
    AACCCTTTAA TGGTTGGTCT CACCCTTATC AGAGGAGCTG ATTCTGGAGC 
    TGTTTGTTTG GATGGAACAT TGCCTGGATA TCACTTGCAC CGTGGACATG 
    GATCTGGAGC TAATAGCTGG CTCATTCAAT TGGAGGGAGG AGGATGGTGC 
    AACAACATCA GGACCTGTGT ATACAGGAAG ACTACTCGAC GTGGTTCCTC 
    TAATTATATG GAGAAACAGC TTCAGTTTAC AGGAATACTG AGTGACAAAG 
    CTCAAGAAAA TCCTGACTTT TTCAACTGGA ATAGAGTTAA GCTTCGTTAC 
    TGCGATGGCG CTTCTTTCAG TGGAGATGGC CAGAATCAGG CTGCACAACT 
    TCAGTTTAGA GGAGAGCGTA TCTGGAGAGC CGCAATAGAT GATTTGAAGG 
    CGAATGGAAT GCGATACGCC AATCAGGCAC TTCTCTCCGG ATGCTCTGCT 
    GGTGGTTTAG CAGCAATCTT GCGCTGCGAT GAGTTTAGGA ACTTATTCCC 
    TGGATCAACC AAAGTCAAGT GCTTGAGTGA TGCAGGCTTG TTCTTGGACA 
    CTGCCGATGT TTCAGGCGGC CGCACAATCA GGAACTTATA CAATGGTGTC 
    GTAGAATTGC AGAGTGTGAA GAACAATCTT CCACGTATAT GCACAAACCA 
    TCTTGATCCA ACCTCGTGTT TCTTCCCACA AAATCTGATC AGTCAAATGA 
    AAACTCCACT TTTTATCGTC AACGCAGCAT ATGATACATG GCAGATTCAA 
    AGCAGTATAG CTCCAACATC AGCTGATCCT AGTGGATTTT GGCATGACTG 
    CAGACTAAAC CATGGAAAAT GTACTCCTGC ACAGTTGAGA TTCTTGCAAG 
    GATTCAGGGA ACAGATGCTT AGAGTAGTCA AGGGCTTCTC AATGTCTAGA 
    CAGAATGGAT TGTTCATCAA TTCTTGCTTT GCTCACTGCC AAACCGAGAG 
    ACAAGATACT TGGTTTGCCG ATGATTCTCC TGTTATCAGG AAAAAGGCGG 
    TGGCAATAGC TGTAGGAGAT TGGTATTTCG ATAGAGCGGA AGTGAAGTTA 
    GTCGATTGCC CATACCCGTG TGACAAGAGC TGCCACAACT TGGTGTTCAG 
    ATGATTGTTT GACTATGTTC TTTATTCTCT CTCATATATA CATACCTTAG 
    AAAATTTCTT TCTTTCAAAA GGAAAGATTT TGTATCCTTT GGTAGTAACC 
    AATGCCTCAT TGGTATATGA TTAAGTGTAT CGTGGAAAAT CATAATAAAA 
    AAACAAAACA AAACAAAGTT TGCTTAAAAA GAGTTCAATG GAAAAAAAAA 
    AAAAAAA

    Gene models with high sequence identity

    1. AT3G05910.1 [+] show detail - Pectinacetylesterase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam PAE 2.8e-166
    HMMPanther Pectinacetylesterase 3.4e-301
    HMMPanther NOTUM-RELATED 3.4e-301

    See the detailed result >

    AT3G05910.1

    Model type
    Protein coding
    Short Description
    Pectinacetylesterase family protein
    Computational Description
    Pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT5G26670.1); Has 545 Blast hits to 537 proteins in 93 species: Archae - 0; Bacteria - 42; Metazoa - 117; Fungi - 0; Plants - 302; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR