F11013

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11013

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11013

Determination of introduced cDNA(s)

  • RAFL09-89-O12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-89-O12 - Resource: pda06946

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-89-O12 - full reading 
    AAGAGCCTCG GAGCATTCGA AAAGTTCGCC GGAAAAACAA AAACATGCCG 
    ACGAACAACA CTCCGTTCCT CACTATTTTT CTCCTCTTTC TTGGTTTACT 
    CCGGTTCGAT TCATTTCCCG GTTTAGAAGC TGCAACCGGG AAATTAGCTT 
    CGATTCCAGG ATTATACGTG TTCGGAGATT CGTTAGTTGA TGCCGGCAAC 
    AATAATTACT TACCAATTTC AATATCTAAA GCTAATTATC CACATAACGG 
    CGTCGATTTT CCGAACAAGA AACCTACCGG AAGATTCTGT AACGGCAAGA 
    ACGCCGCCGA TGCTATCGCT GAGAAATTTG GTTTACCGTT ACCACCTCCC 
    TATCTCTCAC TTAGAGGCTT ACTAAAAAGG GAGAAGAGAA AATCTGCCGC 
    CGTGACTGGT GTGAATTTTG CTTCCGGTGG AGCCGGAATC TTCAACAGTT 
    CCGACCAAAA ACTTGGACAA GCTATTCCTT TATCCAAGCA AGTCAACAAT 
    TGGCTCTCTA TTCATGAAGA AGTCATGAAA CTTGAACCAT CCGCAGCACA 
    GCTTCACCTA TCCAAATCTC TATTCACTGT TGTCATAGGA AGTAACGATC 
    TTTTCGATTA CTTTGGATCG TTCAAACTCC GACGCCAGAG CAATCCTCAA 
    CAATATACAC AATTAATGGC TGATAAACTC AAAGAGCAAT TGAAGAGAAT 
    TCACGATAGT GGAGCGCGTA GATTCCTTAT CATCGGGGTA GCACAAATTG 
    GTTGCACACC GGGAAAAAGA GCGAAGAACT CGACACTCCA TGAATGTGAC 
    GAAGGGGCAA ACATGTGGTG CTCTTTGTAC AACGAAGCTC TAGTAAAGAT 
    GCTGCAACAA CTCAAACAAG AATTACAAGG CTCAATAACT TACACTTACT 
    TTGATAACTA CAAGTCCTTA CATGACATTA TTTCCAACCC TGCCCGTTAC 
    GGTTTTGCTG ACGTTACATC TGCGTGTTGT GGAAATGGGG AATTGAACGC 
    AGACCTTCCT TGTCTGCCTT TGGCGAAGTT ATGTTCAGAC AGAACCAAAC 
    ATCTTTTTTG GGATCGCTAT GGCCATCCCA CTGAAGCTGC TGCTCGGACC 
    ATCGTCGATC TTATGTTGAC TGATGATACA CATTACTCAT CTCCTATAAC 
    TCTTACTCAG TTGGTCTCTA CATGATCAAT AATACACACG GCTTCGTTTT 
    TTTGGGAAGA GTACATAATC AAGTAGACAA ATGGGATTTG GAAACTTGAT 
    TTGTAATCAA GTATACGTTA CTAAATTTGT TACCAATGAA ATATATAAGT 
    TTCTTAAAAA AAAATAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT5G55050.1 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Lipase, GDSL, active site 0
    HMMPfam Lipase, GDSL 4.5e-35
    HMMPanther LATERAL SIGNALING TARGET PROTEIN 2 8.4e-28
    HMMPanther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 8.4e-28

    See the detailed result >

    AT5G55050.1

    Model type
    Protein coding
    Short Description
    GDSL-like Lipase/Acylhydrolase superfamily protein
    Computational Description
    GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL, active site (InterPro:IPR008265), Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G50400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR