F11026

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11026

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11026

Determination of introduced cDNA(s)

  • RAFL09-62-F11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-62-F11 - Resource: pda12358

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-62-F11 - full reading 
    AGAGAGACAT TTCGCCATTA GATCCTCTTT TTTTTCTTCG TAGGTCGAAC 
    GAAATTTTGT GTTTCGTTGA GGAGAAAATT GAGCCGTGTT TGTGTTGAGA 
    TGTCTATGAT CGATGAGCCG TTGTACCCAA TCGCCGTACT TATAGACGAG 
    TTAAAAAACG ATGATATTCA GCTAAGATTG AATTCCATCA GAAGGCTTTC 
    TACGATCGCT CGTGCTCTTG GGGAAGAGAG GACTAGAAAG GAATTGATCC 
    CTTTCCTTAG CGAAAACAAT GACGATGATG ATGAGGTTTT ATTAGCAATG 
    GCTGAAGAAT TGGGTGTGTT TATTCCTTAT GTTGGTGGTG TTGAGTATGC 
    ACATGTTCTT CTTCCACCTT TGGAAACTCT TTCGACTGTC GAAGAAACTT 
    GTGTTAGGGA GAAAGCTGTT GAGTCGCTTT GTAGAGTTGG CTCTCAGATG 
    AGGGAGAGTG ACTTGGTTGA TCATTTCATT TCGTTAGTTA AGCGACTTGC 
    CGCTGGTGAG TGGTTCACAG CTAGAGTATC GGCTTGCGGT GTTTTCCATA 
    TTGCATACCC GAGCGCGCCG GATATGTTGA AGACTGAGTT AAGATCGTTG 
    TATACTCAGC TTTGTCAGGA TGATATGCCG ATGGTAAGGA GAGCTGCAGC 
    AACTAATCTT GGGAAATTTG CTGCTACGGT TGAATCAGCG CATTTGAAGA 
    CCGACGTTAT GTCCATGTTT GAGGATCTTA CTCAAGATGA TCAAGATTCT 
    GTTAGATTAT TGGCCGTTGA GGGTTGTGCT GCTCTTGGGA AATTGTTGGA 
    GCCTCAGGAT TGTGTCCAAC ACATTCTTCC CGTGATTGTT AATTTCTCGC 
    AGGATAAGTC TTGGCGTGTG CGCTATATGG TTGCAAATCA ACTCTACGAG 
    CTTTGTGAAG CCGTGGGACC TGAGCCTACT AGGACGGAGC TGGTGCCTGC 
    ATATGTGCGC CTACTTCGTG ATAATGAAGC TGAAGTACGC ATAGCAGCTG 
    CCGGAAAAGT TACAAAGTTT TGTCGGATTC TAAACCCTGA AATTGCTATC 
    CAGCACATTC TCCCCTGTGT GAAGGAGCTA TCATCAGACT CTTCTCAGCA 
    TGTCAGATCT GCATTGGCCT CAGTTATAAT GGGAATGGCT CCAGTCTTGG 
    GTAAGGATGC AACAATTGAG CATCTCCTTC CAATCTTTCT TTCTCTATTG 
    AAAGATGAGT TCCCGGATGT ACGCTTGAAC ATTATCAGCA AACTTGACCA 
    AGTGAATCAG GTTATTGGGA TTGATCTACT ATCACAATCC TTGTTGCCAG 
    CTATTGTAGA ACTTGCTGAA GATAGACACT GGAGAGTAAG ACTTGCTATA 
    ATCGAGTATA TCCCTTTGTT GGCAAGTCAG TTAGGTGTTG GCTTCTTTGA 
    CGATAAGCTT GGTGCTCTTT GCATGCAATG GTTACAAGAC AAGGTTCACT 
    CAATCCGCGA TGCTGCTGCT AACAATCTCA AGCGGCTTGC TGAGGAATTT 
    GGTCCTGAAT GGGCAATGCA ACATATAGTT CCTCAGGTTC TTGAGATGGT 
    TAACAACCCT CACTATCTCT ACCGAATGAC CATTTTGCGT GCGGTGTCTC 
    TTCTTGCACC TGTAATGGGC TCAGAGATTA CATGCTCTAA GCTCTTACCT 
    GTAGTAATGA CTGCATCTAA AGACAGAGTT CCAAACATCA AATTCAACGT 
    CGCTAAAGTA CTTCAATCCC TCATTCCAAT AGTTGATCAA TCGGTTGTGG 
    AGAAGACGAT TCGTCCTGGG CTTGTGGAGC TAAGCGAGGA TCCAGATGTT 
    GATGTCAGGT TTTTCGCAAA CCAAGCTCTA CAATCTATTG ACAATGTGAT 
    GATGTCTAGC TAAAACCATT AGATCTTGTC TCTCTGCTTA TAATCGTTTT 
    CTATTTGATT GAAAAAAAAA ACAAATCTCA AGACTTTTGT AACGTAGTAG 
    TGGATTCTCG TCTTGTGTTT TTTATTACAC GCAAACTACT AGAGTGCCTC 
    GGTACGGGTT TTGTCCATTG TCTTGCTACT AATGTGTTTA AAACTCTATG 
    TTGATAACTA A

    Gene models with high sequence identity

    1. AT3G25800.1 [+] show detail - protein phosphatase 2A subunit A2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Armadillo-type fold 3.5e-112
    HMMPanther SERINE/THREONINE PROTEIN PHOSPHATASE 2A REGUL 0
    Gene3D Armadillo-like helical 4.1e-181
    ProfileScan HEAT, type 2 9.815
    ProfileScan HEAT, type 2 8.522
    ProfileScan HEAT, type 2 9.927
    ProfileScan HEAT, type 2 9.674
    ProfileScan HEAT, type 2 13.693
    ProfileScan HEAT, type 2 13.018
    ProfileScan HEAT, type 2 12.316
    ProfileScan HEAT, type 2 12.765
    ProfileScan HEAT, type 2 11.669
    ProfileScan HEAT, type 2 8.691
    ProfileScan HEAT, type 2 9.871
    ProfileScan HEAT, type 2 11.135
    ProfileScan HEAT, type 2 10.77
    HMMPfam HEAT 0.0007
    HMMPfam HEAT 0.000032
    HMMPfam HEAT 0.01
    HMMPfam HEAT 0.0055
    HMMPfam HEAT 0.0061
    HMMPfam HEAT 0.0023
    HMMPfam HEAT 0.014

    See the detailed result >

    AT3G25800.1

    Model type
    Protein coding
    Short Description
    protein phosphatase 2A subunit A2
    Curator Summary
    one of three genes encoding the protein phosphatase 2A regulatory subunit
    Computational Description
    protein phosphatase 2A subunit A2 (PP2AA2); FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: response to cadmium ion, regulation of phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A subunit A3 (TAIR:AT1G13320.3); Has 2834 Blast hits to 1736 proteins in 250 species: Archae - 15; Bacteria - 74; Metazoa - 1458; Fungi - 417; Plants - 306; Viruses - 0; Other Eukaryotes - 564 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR