F11112

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11112

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F11112

Determination of introduced cDNA(s)

  • RAFL06-67-M18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-67-M18 - Resource: pda03281

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-67-M18 - full reading 
    GGAAGAAGGA TAAGAAAAAA TGGCAGGTGA TGGCGTAGAA AATGCAAAGC 
    CACCGCAGAA ACAGGAAGAT CTTCAGCCTC ATCCGGTGAA GGATCAACTT 
    TACGGTATCA CTTACTGCCT CACAAGTCCT CCTCCTTGGC CGGAGACAAT 
    ACTTCTGGGG TTTCAACACT ACTTAGTGAT GCTTGGAACA ACTGTTCTCA 
    TTCCAACAAT GTTAGTTTCA AAGATTGATG CAAGAAACGA AGATAAGGTA 
    AAGTTGATTC AGACGTTGCT CTTTGTGTCT GGAATCAACA CGTTATTTCA 
    AAGCTTCTTT GGGACTCGTC TTCCTGCTGT CATTGGAGCT TCTTACTCTT 
    ATGTGCCAAC TACAATGTCA ATCGTCTTAG CTGCTCGTTA CAATGACATT 
    ATGGATCCTC AAAAGAGATT TGAACAGATC ATGCGTGGAA TCCAAGGTGC 
    TCTTATTATT GCCTCATTTC TTCATATCCT TGTTGGTTTC AGTGGCCTTT 
    GGCGCAATGT TACTAGGTTT TTGAGTCCCT TATCTGCAGT TCCTCTTGTA 
    GCCTTTTCTG GCTTTGGACT CTATGAACAA GGATTCCCTA TGCTAGCAAA 
    ATGCATTGAG ATTGGACTGC CTGAGATCAT ACTTCTTGTC ATATTCTCAC 
    AGTACATTCC TCATCTGATG CAAGGAGAAA CATGTTCTAA CTTCTTCCAC 
    CGATTTGCTG TGATATTCTC AGTGGTGATT GTGTGGCTTT ATGCATACAT 
    TCTAACCATT GGTGGGGCTT ATAGTAACAC AGAAATCAAT ACTCAAATCA 
    GTTGCAGAAC CGACCGTGCT GGCATCATTA GCGCTTCTCC ATGGATTAGA 
    GTGCCTCACC CTATTCAATG GGGAGGAGCT CCAACTTTCA ATGCAGGGGA 
    TATTTTTGCT ATGATGGCTG CTTCTTTCGT TTCTCTTGTC GAGTCTACAG 
    GGACATACAT TGCTGTATCG AGATATGCAA GTGCAACACC AATCCCACCT 
    TCTGTGCTTA GTCGTGGAAT CGGTTGGCAG GGATTTGGAA TTCTTCTCTG 
    TGGATTATTT GGAGCAGGAA ATGCAACATC CGTGTCTGTA GAGAATGCCG 
    GCTTGTTGGC TGTAACACGC GTTGGTAGTA GACGTGTAAT TCAAGTAGCA 
    GCTGGATTCA TGATCTTCTT CTCCATTCTT GGTAAATTTG GGGCTATCTT 
    TGCTTCGATT CCAGCTCCTA TCGTCGCAGC TCTTTACTGT TTGTTCTTCT 
    CATACGTTGG TGCTGGTGGT CTAAGTCTAA TCCAGTTCTG CAATCTGAAC 
    AGTTTCAGAA CTAAGTTCAT TCTTGGATTC TCCATCTTCA TGGGCTTATC 
    CATACCTCAA TACTTTTACC AGTACACAAC TTTGGAAACC TATGGACCCG 
    TTCGGACATC CGCAACATGG TTCAACAACA TTATAAACGT TCCTTTCTCA 
    TCTAAAGCAT TTGTTTCCGG GATTTTGGCC TTCTTTCTAG ACACGACATT 
    GCCTCCAAAG GACAAGACGA CAAAGAAAGA TCGAGGACTA GTTTGGTGGA 
    AGCGATTTAA ATCGTTCCAA TCTGATAACA GAAGCGAAGA GTTCTACTCT 
    TTGCCTCTCA ATCTCAGCAA GTACTTTCCT TCTCACTGAT GAAATGGCAT 
    TGTAAACTTC AAGAAACAGA GTTTGATCGA TTCAGTGTCC TGTTTCCCGC 
    ACTTGTTTCA GTACTGATCT CGCAAAAAAA AAAAAAAAA

    Gene models with high sequence identity

    1. AT1G10540.1 [+] show detail - nucleobase-ascorbate transporter 8
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Xanthine/uracil/vitamin C permease 3.2e-69
    HMMPanther SODIUM-DEPENDENT VITAMIN C TRANSPORTER 4.9e-281
    HMMPanther Xanthine/uracil/vitamin C permease 4.9e-281

    See the detailed result >

    AT1G10540.1

    Model type
    Protein coding
    Short Description
    nucleobase-ascorbate transporter 8
    Computational Description
    nucleobase-ascorbate transporter 8 (NAT8); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: nucleobase-ascorbate transporter 7 (TAIR:AT1G60030.1); Has 9247 Blast hits to 9232 proteins in 1900 species: Archae - 67; Bacteria - 7567; Metazoa - 351; Fungi - 128; Plants - 453; Viruses - 1; Other Eukaryotes - 680 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR