F11118

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11118

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11118

Determination of introduced cDNA(s)

  • RAFL04-12-P17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-12-P17 - Resource: pda00495

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-12-P17 - full reading 
    ACAAACAAAA CAATCATTGG AAGAAGCAAA AGAAAAAAAA AAAGATTGAA 
    ATGGAGAAGA AGCTACCGAG AAGATTGGAA GGCAAAGTCG CGATTGTGAC 
    GGCTTCGACG CAAGGGATTG GTTTCGGAAT CACTGAGCGT TTCGGTCTCG 
    AAGGCGCTTC CGTCGTCGTC TCTTCCCGCA AACAGGCAAA TGTTGATGAG 
    GCAGTAGCAA AACTCAAATC CAAAGGGATT GATGCATATG GAATCGTCTG 
    TCATGTTTCC AATGCTCAAC ATCGCCGCAA TCTTGTCGAA AAGACGGTTC 
    AGAAATATGG GAAGATAGAT ATCGTTGTCT GTAACGCTGC TGCCAATCCA 
    TCTACAGACC CAATCTTGTC TAGCAAAGAA GCTGTTCTTG ACAAGCTTTG 
    GGAAATCAAT GTCAAATCCT CTATACTTCT CCTGCAGGAT ATGGCTCCTC 
    ACCTTGAGAA GGGTTCTTCT GTTATCTTCA TAACTTCTAT TGCTGGATTT 
    TCACCACAAG GAGCTATGGC TATGTATGGT GTCACTAAAA CTGCTCTTCT 
    CGGACTAACT AAGGCGCTTG CTGCTGAGAT GGCCCCCGAT ACACGTGTGA 
    ACGCAGTTGC ACCCGGTTTT GTGCCCACAC ACTTTGCTTC TTTCATCACC 
    GGTAGCTCTG AAGTGAGGGA AGGTATTGAA GAGAAGACTC TGCTTAACAG 
    GTTGGGAACA ACGGGAGACA TGGCTGCTGC GGCTGCTTTC TTAGCATCAG 
    ATGATTCTTC TTACATCACT GGAGAAACTT TGGTTGTCGC TGGAGGAATG 
    CCTTCAAGAC TCTAAACAAT TTCACATCAA TAATAGCGTA AAGAATGCAA 
    TCAGGGTATC AAGTAAGTAG AGATGTTTTT TTTAGAGTTT TCAACTAAAC 
    AAGACTTTAA GAAACGAAAG ATGTTCCAAT AATATCACGA GGCCATTGGA 
    TACTTGTTGG TCTTGTAAAA GATAATTTCT TCATCAGAAA GACTCGTTTG 
    GGTTTAATTC AGTGGTAGAA CAATAAAGTT TGGGTTTCGC ATGTATGTGT 
    ATATGTAACA ACTAGGGTTC TAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT4G05530.1 [+] show detail - indole-3-butyric acid response 1
      E-value: 0; Score: 99.91

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Short-chain dehydrogenase/reductase, conserved site 0
    FPrintScan Glucose/ribitol dehydrogenase 3.8e-31
    FPrintScan Glucose/ribitol dehydrogenase 3.8e-31
    FPrintScan Glucose/ribitol dehydrogenase 3.8e-31
    FPrintScan Glucose/ribitol dehydrogenase 3.8e-31
    FPrintScan Glucose/ribitol dehydrogenase 3.8e-31
    FPrintScan Glucose/ribitol dehydrogenase 3.8e-31
    FPrintScan Short-chain dehydrogenase/reductase SDR 0.00009
    FPrintScan Short-chain dehydrogenase/reductase SDR 0.00009
    superfamily NAD(P)-binding domain 1.7e-70
    HMMPfam Short-chain dehydrogenase/reductase SDR 3.8e-24
    HMMPanther DEHYDROGENASE, SHORT CHAIN PROTEIN 13-RELATED 7.8e-140
    HMMPanther Short-chain dehydrogenase/reductase SDR 7.8e-140
    Gene3D NAD(P)-binding domain 3.2e-66

    See the detailed result >

    AT4G05530.1

    Model type
    Protein coding
    Short Description
    indole-3-butyric acid response 1
    Curator Summary
    Encodes a peroxisomal member of the short-chain dehydrogenase/reductase (SDR) family of enzymes. Loss of IBR1 function causes increased resistance to indole-3-butyric acid without affecting plant responses to IAA, NAA, and 2,4-D. This enzyme may be responsible for catalyzing a dehydrogenation step in the beta-oxidation-like conversion of IBA to IAA.
    Computational Description
    indole-3-butyric acid response 1 (IBR1); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: root hair elongation, indolebutyric acid metabolic process, response to indolebutyric acid stimulus; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G29150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR