F11121

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11121

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11121

Determination of introduced cDNA(s)

  • RAFL06-81-H23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-81-H23 - Resource: pda07702

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-81-H23 - full reading 
    TTTTCAGTAT TTACAAGAGA AGGTGCAAAA GTATGAAGGA TCGTATCCAG 
    GTTGGAGTCA GGAACCAACA AAGTTGACGC CATGGAGGAA TAATCATTGG 
    CGAGTTCAAA GTTTGGGGAA CCACCCAGTA GCTATAAATA ATGGATCTGG 
    TCCAGGGATA CCTTTTCCTG GAAAGTTTGA AGACAACACT GTGACTTCGA 
    CACCTGCAAT TATTGCAGAA CCGCAAATCC CGATTGAATC TGACAAAGCA 
    AGAGCTATAA CCGGCATATC GATTGAAAGT CAACCTGAGT TAGACGACAA 
    AGGATTACCA CCACTACAAC CAATTCTTCC AATGGTACAA GGCGAACAAG 
    CTAATGAATG TCCTGCAACT AGTGATGGGC TAGGCCAAAG TAATGACCTG 
    GTTATTGAAG GTGGAACCAT TAGCATCTCT AGTGCCTACT CGCATGAGTT 
    ATTGAGCTCA TTAACACAAG CACTCCAGAA TGCAGGCATT GATCTGTCGC 
    AAGCAAAGCT TTCTGTGCAG ATCGATCTTG GGAAGCGAGC CAATCAAGGT 
    CTAACTCATG AAGAGCCATC AAGTAAGAAT CCATTATCAT ATGATACGCA 
    AGGAAGGGAT TCAAGCGTTG AGGAAGAATC TGAACATTCT CACAAGCGGA 
    TGAAAACACT GTGACATTTC TCTCTCAGGC TCCACGGCGC TGGAATATAT 
    AAATGTATTG ACAGATTCCT TGTATCGTGT ACATTGTTCG GCTTCTAGGG 
    GTTCCTATAG TACTCGTTAA GATAAACTTT GGTTAGTAGA TTCTGCGTTT 
    TTTTGTGGTT CTGAGTTTGT ATCATCTTCT GCATCATTCA TGTAACCTAT 
    CAAATATGAT CTCTTGTGGT TTCAAGTTAT TGCATCATTT TTTTCCGAAA 
    AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT1G69010.1 [+] show detail - BES1-interacting Myc-like protein 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G69010.1

    Model type
    Protein coding
    Short Description
    BES1-interacting Myc-like protein 2
    Computational Description
    BES1-interacting Myc-like protein 2 (BIM2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: dTDP-rhamnose biosynthetic process, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G08130.3); Has 2743 Blast hits to 2732 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 63; Plants - 2453; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR