F11133

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11133

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11133

Determination of introduced cDNA(s)

  • RAFL04-20-L08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-20-L08 - Resource: pda02395

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-20-L08 - full reading 
    TGGTCCAGTC AAATATAATA ATAAGCCATT GAAAAAAATG GCGGAGGAGA 
    GCAGAGTCCC ATCATCGGTG TCGGTAACAG TCGCCCACGA CCTTCTTCTA 
    GCCGGCCACC GCTATCTAGA CGTCAGGACT CCAGAAGAGT TCAGCCAGGG 
    ACATGCCTGT GGGGCGATCA ACGTGCCTTA CATGAATCGA GGAGCATCAG 
    GGATGTCAAA GAACCCCGAC TTCCTGGAAC AAGTCTCCTC CCATTTCGGA 
    CAATCCGATA ACATCATTGT TGGCTGCCAG AGCGGTGGTA GATCTATCAA 
    AGCCACCACC GATCTTCTCC ATGCAGGTTT CACGGGAGTC AAAGATATCG 
    TCGGTGGCTA TAGTGCCTGG GCCAAGAATG GCCTTCCTAC AAAGGCTTGA 
    TGACTCACCA TTCACCAAAC ATCTTTCCTT ATCTCTTCGT CTCCTTCTTC 
    TTCAATAATG CATCCTTTCC GCATGTAATC ATCAATAAAT GACCCTCCTT 
    TCTCTTTGCT GTCTGATGTG ATAGCTTGGA GGGAGGGGCT CATCGCATCT 
    TTTTAAAATA TATAAAAATA CGAGTGTGTG TTGATTGCG

    Gene models with high sequence identity

    1. AT5G66040.1 [+] show detail - sulfurtransferase protein 16
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Rhodanese-like 18.907
    superfamily Rhodanese-like 1.6e-26
    HMMSmart Rhodanese-like 5.1e-20
    Gene3D Rhodanese-like 7.6e-31
    HMMPfam Rhodanese-like 2.1e-16
    HMMPanther FAMILY NOT NAMED 6.4e-07

    See the detailed result >

    AT5G66040.1

    Model type
    Protein coding
    Short Description
    sulfurtransferase protein 16
    Curator Summary
    Encodes a protein with thiosulfate sulfurtransferase/rhodanese activity in vitro, however, it is likely to use a substrate other than thiosulfate or 3-mercaptopyruvate in vivo.
    Computational Description
    sulfurtransferase protein 16 (STR16); CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT4G35770.1); Has 3621 Blast hits to 3614 proteins in 1089 species: Archae - 47; Bacteria - 2736; Metazoa - 68; Fungi - 45; Plants - 236; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR