F11139

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11139

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11139

Determination of introduced cDNA(s)

  • RAFL09-23-E17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-23-E17 - Resource: pda05719

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-23-E17 - full reading 
    ATCCCAAAAA TAAAAAGAGT ATATCTCTCA CACACATACA CAAACTTGAC 
    AGTTTTTTAA TTTCTCTGTT AGTGAACTCA AACCTTCCCA TTTCCATGGA 
    CACCAAAATC GGATCGATCG ATGATTGCAA GCCGACGAAC GGCGACGTCT 
    GTAGTCCAAC AAACGGCACC GTCGCAACAA TCCACAACTC TGTTCCTTCC 
    TCCGCTATCA CCATCAACTA CTGCGACGCG ACTCTCGGCC GTCACTTAGC 
    TCGTCGTCTC GTCCAAGCCG GCGTTACGGA TGTTTTCTCT GTTCCCGGAG 
    ATTTCAACCT CACTTTGCTT GATCACCTCA TGGCTGAGCC GGACCTCAAC 
    CTAATCGGAT GTTGTAACGA GCTAAACGCC GGTTACGCTG CCGACGGTTA 
    CGCTAGATCT CGTGGAGTCG GCGCTTGCGT TGTTACCTTC ACCGTTGGTG 
    GACTCAGCGT TTTAAACGCG ATCGCTGGTG CTTACAGCGA GAATCTTCCT 
    CTTATCTGTA TCGTCGGAGG TCCTAACTCT AACGATTATG GCACTAACCG 
    GATTCTTCAT CACACCATTG GATTACCTGA TTTTAGCCAA GAGCTTAGGT 
    GCTTCCAAAC GGTGACTTGT TATCAGGCGG TGGTGAACAA TTTAGATGAT 
    GCTCATGAAC AGATTGATAA AGCAATATCA ACAGCTTTGA AAGAGAGCAA 
    GCCTGTGTAT ATAAGTGTAA GCTGTAACTT AGCAGCGATT CCTCATCATA 
    CATTTAGCCG TGATCCTGTC CCTTTTTCTC TAGCTCCAAG ATTGAGCAAC 
    AAGATGGGTT TAGAAGCTGC GGTGGAAGCA ACATTGGAGT TTCTGAATAA 
    GGCTGTGAAG CCAGTTATGG TTGGTGGTCC TAAGTTGCGT GTGGCTAAAG 
    CTTGTGATGC CTTTGTTGAG CTAGCTGATG CTTCAGGCTA TGCTTTGGCG 
    ATGATGCCTT CTGCGAAAGG CTTTGTACCA GAGCACCATC CTCATTTCAT 
    TGGAACTTAT TGGGGAGCAG TGAGCACTCC TTTTTGCTCT GAGATTGTGG 
    AATCTGCGGA TGCTTACATT TTTGCAGGTC CAATCTTCAA CGACTATAGC 
    TCTGTTGGTT ACTCGCTTCT CCTCAAGAAA GAAAAAGCCA TCGTTGTGCA 
    ACCTGATCGT ATCACTGTGG CCAATGGTCC TACTTTTGGT TGCATTTTGA 
    TGAGCGATTT CTTCAGGGAA TTGTCTAAGA GGGTGAAGCG TAACGAGACT 
    GCATATGAGA ACTACCATAG GATCTTTGTC CCTGAAGGTA AGCCATTGAA 
    GTGTGAATCA AGAGAGCCAT TGAGAGTTAA CACAATGTTC CAGCACATTC 
    AGAAGATGCT CTCTAGTGAA ACCGCTGTGA TTGCTGAAAC CGGTGATTCT 
    TGGTTCAATT GCCAAAAACT AAAGCTGCCA AAAGGATGTG GGTACGAGTT 
    TCAGATGCAG TATGGATCGA TTGGGTGGTC TGTTGGTGCA ACTCTAGGAT 
    ACGCACAGGC ATCACCAGAA AAGCGAGTGT TGGCATTCAT CGGTGATGGG 
    AGTTTCCAAG TCACGGTTCA GGACATATCA ACAATGCTGC GTAATGGACA 
    GAAGACGATC ATCTTCTTGA TTAACAATGG TGGCTACACC ATTGAAGTAG 
    AGATTCATGA CGGTCCTTAT AACGTGATTA AGAACTGGAA CTACACTGGT 
    CTCGTTGACG CCATTCATAA CGGTGAAGGC AATTGCTGGA CTGCAAAGGT 
    GAGATACGAA GAGGAGTTAG TGGAGGCGAT TACGACAGCG ACGACGGAGA 
    AGAAAGATTG TCTATGTTTC ATAGAAGTGA TTCTTCACAA GGATGATACG 
    AGCAAAGAGT TGCTTGAGTG GGGCTCACGC GTCTCTGCTG CTAACAGCCG 
    TCCTCCCAAT CCTCAGTAGA AGAAGCAACA CAGAATCTTC AATGCTTCTT 
    ACCAATTTAG TGACATTTTC TGATAAGTGT TGATTTTTCG ACCGTTGGGT 
    TTAATCATGT TTCAAACTTA TTAGTATCTC TTTCCATGTA CGCTTTATCA 
    TGGAATAAAG TAAAGCTCCT TTTACAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT4G33070.1 [+] show detail - Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thiamin diphosphate-binding fold (THDP-bindin 1.6e-46
    superfamily Thiamin diphosphate-binding fold (THDP-bindin 1.2e-45
    superfamily DHS-like NAD/FAD-binding domain 6.3e-38
    HMMPanther PYRUVATE DECARBOXYLASE 4.4e-174
    HMMPanther THIAMINE PYROPHOSPHATE ENZYMES 4.4e-174
    PatternScan TPP-binding enzymes, conserved site 0
    HMMPIR Pyruvate decarboxylase/indolepyruvate decarboxylase 4.8e-278
    HMMPfam Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain 3.4e-37
    HMMPfam Thiamine pyrophosphate enzyme, C-terminal TPP-binding 8.8e-16
    HMMPfam Thiamine pyrophosphate enzyme, central domain 3.7e-17
    Gene3D no description 9e-61
    Gene3D no description 5.1e-46
    Gene3D no description 8.7e-52

    See the detailed result >

    AT4G33070.1

    Model type
    Protein coding
    Short Description
    Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
    Computational Description
    Thiamine pyrophosphate dependent pyruvate decarboxylase family protein; FUNCTIONS IN: in 6 functions; LOCATED IN: membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Pyruvate decarboxylase/indolepyruvate decarboxylase (InterPro:IPR012110), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT5G01320.1); Has 20589 Blast hits to 20526 proteins in 2548 species: Archae - 428; Bacteria - 13367; Metazoa - 177; Fungi - 761; Plants - 551; Viruses - 4; Other Eukaryotes - 5301 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR