F11145

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) present in fewer numbers in organism (PATO:0001997) (Cauline leaf::Number::few)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin)
T2
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	cauline leaf (PO:0000013)	decreased width (PATO:0000599) (Cauline leaf::Shape::narrow)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others) decreased width (PATO:0000599) (Rosette leaf::Shape::narrow) present in greater numbers in organism (PATO:0000470) (Rosette leaf::Number::many) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	present in greater numbers in organism (PATO:0000470) (Stem::Number::many)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11145

Determination of introduced cDNA(s)

RAFL09-15-K24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-15-K24 - Resource: pda01846

full reading [+] show sequence

ATTCCCACTT CCACACATAC ACATATACAA CAGAGCAAGA GAGTCAATCA 
AGTAGAGTGA AGATGGCAAC TAAACAAGAA GCTTTAGCCA TCGATTTCAT 
AAGCCAACAC CTTCTCACAG ACTTTGTTTC CATGGAAACT GATCACCCAT 
CTCTTTTTAC CAACCAACTT CACAACTTTC ACTCAGAAAC AGGCCCTAGA 
ACCATCACCA ACCAATCCCC TAAACCGAAT TCGACTCTTA ACCAGCGTAA 
ACCGCCCTTA CCGAATCTAT CCGTCTCGAG AACGGTTTCA ACAAAGACAG 
AGAAAGAGGA AGAAGAGAGG CACTACAGGG GAGTGAGACG AAGACCGTGG 
GGAAAATACG CGGCGGAGAT TAGGGATCCG AACAAAAAGG GTTGTAGGAT 
CTGGCTTGGG ACTTACGACA CTGCCGTGGA AGCTGGAAGA GCTTATGACC 
AAGCGGCGTT TCAATTACGT GGAAGAAAAG CAATCTTGAA TTTCCCTCTC 
GATGTTAGGG TTACGTCAGA AACTTGTTCT GGGGAAGGAG TTATCGGATT 
AGGGAAACGA AAGCGAGATA AGGGTTCTCC GCCGGAAGAG GAGAAGGCGG 
CTAGGGTTAA AGTGGAGGAA GAAGAGAGTA ATACGTCGGA GACGACGGAG 
GCTGAGGTTG AGCCGGTGGT ACCATTGACG TCGTCAAGTT GGATGGGGTT 
TTGGGATGTG GGAGCAGGAG ATGGTATTTT CAGTATTCCT CCGTTATCTC 
CGACGTCTCC CAACTTTTCC GTTATCTCCG TCACTTAAAA CTTCGGAAAA 
GTCAACGTAC GATGACGTTT TCACTTGCGT CACTCTCATG ATTTCATTTA 
TTCTTGTATA ATATAAAGGT AGCGGTAGTG TGCAAATATC AAATAAGTAG 
TTTAATTAGT ACCAATCATT TTATTCATTA TTTTTTTTAG TAGAATATTT 
GGATGTTGAA AATATAAATT TAATTTTGTA TTTGTTGATG TTATAAATTT 
ATTGATTGTA TAAACATTCT TAGTCACCAA AAAAAAAAAA AAAA

Gene models with high sequence identity

AT5G61600.1 [+] show detail - ethylene response factor 104
E-value: 0; Score: 99.90

InterPro Scan Digest

Program	Description	E-value
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	3.4e-13
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	3.4e-13
superfamily	DNA-binding, integrase-type	3e-24
ProfileScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	23.894
HMMPfam	Pathogenesis-related transcriptional factor/ERF, DNA-binding	9.1e-16
HMMSmart	Pathogenesis-related transcriptional factor/ERF, DNA-binding	4.1e-34
Gene3D	Pathogenesis-related transcriptional factor/ERF, DNA-binding	1e-24

See the detailed result >

AT5G61600.1

Model type: Protein coding
Short Description: ethylene response factor 104
Curator Summary: encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
Computational Description: ethylene response factor 104 (ERF104); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G51190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR