F11221

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11221

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11221

Determination of introduced cDNA(s)

  • RAFL06-08-N17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-08-N17 - Resource: pda17162

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-08-N17 - full reading
    GATTCCACCA GTCTCTCGCA ATCTTCGCTC TTCTCTTTGC TCTCTCTCTC 
    TCAACGCGGT TCAGATCCGA GTTTGGGAGA TTCAAGCTCC CTGAAAAAAG
    CCCTTTACTC TCGCTTACCA ACTTTGCTCC AGCATGGCAG GATCTGCACC
    AGAAGGCACA CAGTTTGATG CACGTCAGTT TGACCAGAAA CTCAATGAAG
    TACTTGAGGG ACAAGATGAG TTCTTCACAT CCTATGATGA TGTTCATGAG
    AGCTTTGATG CCATGGGTCT TCAAGAGAAC CTTCTCAGGG GTATTTATGC
    TTATGGTTTT GAGAAGCCTT CTGCTATTCA GCAAAGAGGA ATCGTCCCCT
    TCTGTAAGGG TCTTGATGTG ATTCAACAGG CTCAGTCTGG TACTGGGAAA
    ACAACAACTT TCTGCTCTGG TGTCTTGCAG CAGCTGGACT TCTCCCTTAT
    CCAGTGTCAG GCTTTGGTTC TAGCTCCAAC TAGAGAGCTT GCTCAGCAAA
    TTGAGAAGGT CATGAGGGCC CTTGGTGATT ACCTTGGTGT CAAGGTTCAC
    GCCTGTGTTG GTGGAACCAG TGTCCGTGAG GATCAGCGCA TCCTCCAAGC
    TAGTGTCCAT GTTGTTGTTG GAACTCCAGG GCGTGTCTTT GACATGTTGA
    AGAGGCAGTC TCTTCGTGCT GACAACATCA AGATGTTTGT TCTCGATGAA
    GCTGATGAAA TGCTCTCCCG TGGTTTCAAG GACCAGATCT ATGACATATT
    CCAGCTTCTT CCACCAAAGA TCCAAGTTGG TGTGTTCTCC GCAACAATGC
    CACCAGAAGC TCTTGAGATC ACAAGGAAGT TCATGAGCAA GCCAGTGAGA
    ATCTTGGTGA AGCGTGATGA GCTTACCCTT GAAGGTATCA AGCAGTTCTA
    CGTCAACGTT GAGAAAGAAG AGTGGAAGCT CGAGACACTC TGTGATCTCT
    ACGAGACTCT TGCCATCACT CAGAGTGTCA TCTTCGTGAA CACCAGGCGT
    AAGGTTGATT GGCTCACAGA CAAAATGAGA AGCCGTGACC ACACAGTCTC
    TGCAACTCAC GGAGACATGG ACCAGAACAC CAGGGACATC ATCATGAGAG
    AGTTCAGGTC TGGTTCCTCC CGTGTTCTCA TCACCACTGA CCTCTTAGCT
    CGTGGTATTG ATGTCCAACA AGTCTCCCTG GTTATCAACT TCGATCTCCC
    AACTCAGCCA GAGAACTACC TTCACCGTAT CGGAAGAAGT GGAAGGTTCG
    GGAGAAAGGG TGTTGCGATC AATTTCGTGA CCCGTGATGA TGAGAGGATG
    CTGTTTGATA TTCAGAAATT CTACAATGTG GTTGTCGAAG AGCTGCCTTC
    GAACGTGGCC GATCTGCTGT GAAGGGAGAA AAGAAGTCGG TTCTGTTGCT
    GTGTTTGCTC TGCCGTACTA GTATCACCGG AGAAGAAAGG TTTTCTTGTT
    TTGCAAGGCA CTCTTTGATC TGATTTTGAC CCGTCGTCTA TCAGCGATTT
    ACATTTCTTA AATTTTCTTA GTTGTTGTTC TCTCCTCTCT CTCCCAGCTA
    CGAACATATC TCTCTCTTCT TGACCATTTT TAAGTTTAAG TCATATGGAG
    TATTTATTTC TTCAAAAAAA AGA

    Gene models with high sequence identity

    1. AT3G13920.1 [+] show detail - eukaryotic translation initiation factor 4A1
      E-value: 0; Score: 99.88

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam DNA/RNA helicase, DEAD/DEAH box type, N-terminal 1.1e-43
    HMMPfam DNA/RNA helicase, C-terminal 1.4e-25
    ProfileScan Helicase, superfamily 1/2, ATP-binding domain 29.566
    ProfileScan DNA/RNA helicase, C-terminal 25.831
    ProfileScan RNA helicase, DEAD-box type, Q motif 10.433
    Gene3D no description 7.6e-68
    Gene3D no description 5.6e-51
    PatternScan RNA helicase, ATP-dependent, DEAD-box, conserved site 0
    HMMSmart DEAD-like helicase, N-terminal 3.7e-56
    HMMSmart DNA/RNA helicase, C-terminal 2.9e-31
    superfamily P-loop containing nucleoside triphosphate hyd 1.3e-56
    superfamily P-loop containing nucleoside triphosphate hyd 8e-48
    HMMPanther EUKARYOTIC INITIATION FACTOR 4A 1.1e-300
    HMMPanther DEAD BOX ATP-DEPENDENT RNA HELICASE 1.1e-300

    See the detailed result >

    AT3G13920.1

    Model type
    Protein coding
    Short Description
    eukaryotic translation initiation factor 4A1
    Curator Summary
    eukaryotic translation initiation factor 4A-1
    Computational Description
    eukaryotic translation initiation factor 4A1 (EIF4A1); FUNCTIONS IN: protein binding, ATP-dependent helicase activity, translation initiation factor activity; INVOLVED IN: response to cadmium ion, translational initiation; LOCATED IN: cytosol, nucleolus, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eif4a-2 (TAIR:AT1G54270.1); Has 49714 Blast hits to 49117 proteins in 3142 species: Archae - 779; Bacteria - 27442; Metazoa - 6117; Fungi - 4773; Plants - 2624; Viruses - 17; Other Eukaryotes - 7962 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR