F11229

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11229

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11229

Determination of introduced cDNA(s)

  • RAFL05-02-G09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-G09 - Resource: pda02417

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-02-G09 - full reading
    AGGAGAAGAA GTTAAAGCAA AACACATACA AACGCAGTCA CCTTCTCTAT 
    CGCCTCCTTC TTCAATCTCA TCGCAATCAT GATCATATCA GAGACTAACC
    GCCGTGAGAT CTCCAAGTAC CTCTTCAAAG AGGGTGTTTT GTTTGCTAAA
    AAGGATTTCA ACTTACCACA ACATCCTTTG ATTGAGAGTG TTCCAAATCT
    GCAAGTTATC AAGTTGATGC AGAGTTTCAA ATCTAAGGAA TATGTGAGAG
    AGACCTTTGC TTGGATGCAT TACTACTGGT TCCTCACAAA TGAAGGTATT
    GACTTTCTCA GGACTTACCT TAATCTCCCA TCTGAGATTG TTCCTGCTAC
    TTTGAAGAAG CAACAGAAGC CTCTTGGTCG ACCTTTTGGA GGTGGTGGTG
    ACCGTCCCCG TGGCCCTCCT CGTGGTGATG GAGAGAGGAG GTTTGGTGAC
    AGAGATGGAT ACCGTGGAGG TCCTAAATCA GGTGGAGAGT ATGGTGACAA
    GGCTGGAGCA CCTGCTGATT ACCAGCCTGG CTTCAGGGGT GGAGCTGGTG
    GAGCTAGGCA AGGGTTTGGT CGTGGAGCTG GTGGTTTCGG TGGTGGTGCT
    GCTGGATCTG ATCTTCCTTG AAAAGGACTT TCTTGTTTCT TTTTGGTCTT
    ATTTAAGGTT ACATAGTACC TTTGATTTGA GAACGAATGT GTCTTTTGGA
    ACTTTGTTTC TTTCTCTAAA ACCATCTCAC AATATGATTG TTTTTTACGT
    TAGAATTTTA TGAAGAAATG TTGGATCGTG A

    Gene models with high sequence identity

    1. AT5G41520.1 [+] show detail - RNA binding Plectin/S10 domain-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 40S RIBOSOMAL PROTEIN S10 2.3e-88
    HMMPfam Plectin/S10, N-terminal 3.4e-41

    See the detailed result >

    AT5G41520.1

    Model type
    Protein coding
    Short Description
    RNA binding Plectin/S10 domain-containing protein
    Computational Description
    RNA binding Plectin/S10 domain-containing protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: RNA binding Plectin/S10 domain-containing protein (TAIR:AT4G25740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR