F11229

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11229

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11229

Determination of introduced cDNA(s)

  • RAFL05-02-G09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-G09 - Resource: pda02417

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-02-G09 - full reading 
    AGGAGAAGAA GTTAAAGCAA AACACATACA AACGCAGTCA CCTTCTCTAT 
    CGCCTCCTTC TTCAATCTCA TCGCAATCAT GATCATATCA GAGACTAACC 
    GCCGTGAGAT CTCCAAGTAC CTCTTCAAAG AGGGTGTTTT GTTTGCTAAA 
    AAGGATTTCA ACTTACCACA ACATCCTTTG ATTGAGAGTG TTCCAAATCT 
    GCAAGTTATC AAGTTGATGC AGAGTTTCAA ATCTAAGGAA TATGTGAGAG 
    AGACCTTTGC TTGGATGCAT TACTACTGGT TCCTCACAAA TGAAGGTATT 
    GACTTTCTCA GGACTTACCT TAATCTCCCA TCTGAGATTG TTCCTGCTAC 
    TTTGAAGAAG CAACAGAAGC CTCTTGGTCG ACCTTTTGGA GGTGGTGGTG 
    ACCGTCCCCG TGGCCCTCCT CGTGGTGATG GAGAGAGGAG GTTTGGTGAC 
    AGAGATGGAT ACCGTGGAGG TCCTAAATCA GGTGGAGAGT ATGGTGACAA 
    GGCTGGAGCA CCTGCTGATT ACCAGCCTGG CTTCAGGGGT GGAGCTGGTG 
    GAGCTAGGCA AGGGTTTGGT CGTGGAGCTG GTGGTTTCGG TGGTGGTGCT 
    GCTGGATCTG ATCTTCCTTG AAAAGGACTT TCTTGTTTCT TTTTGGTCTT 
    ATTTAAGGTT ACATAGTACC TTTGATTTGA GAACGAATGT GTCTTTTGGA 
    ACTTTGTTTC TTTCTCTAAA ACCATCTCAC AATATGATTG TTTTTTACGT 
    TAGAATTTTA TGAAGAAATG TTGGATCGTG A

    Gene models with high sequence identity

    1. AT5G41520.1 [+] show detail - RNA binding Plectin/S10 domain-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 40S RIBOSOMAL PROTEIN S10 2.3e-88
    HMMPfam Plectin/S10, N-terminal 3.4e-41

    See the detailed result >

    AT5G41520.1

    Model type
    Protein coding
    Short Description
    RNA binding Plectin/S10 domain-containing protein
    Computational Description
    RNA binding Plectin/S10 domain-containing protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Plectin/S10, N-terminal (InterPro:IPR005326); BEST Arabidopsis thaliana protein match is: RNA binding Plectin/S10 domain-containing protein (TAIR:AT4G25740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR