F11238

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11238

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11238

Determination of introduced cDNA(s)

  • RAFL09-11-I21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-11-I21 - Resource: pda05404

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-11-I21 - full reading 
    AGGAACAACA ATCACAGAAC AAGACGGCAC AAGCAAAAAA AGGCTGAAGA 
    ACCTACTACT ACCACTCTCG TTACACCGGA AAAGCTACCT TCTCCGAGCC 
    TCACGCCTTC TGAAGTATCT GAATCTACTC AAGATGCCCT ACCGACAGAG 
    ACAGAAACTC TGGAGAAAGT GACTGAGACT AATCCACCGG AAACTGCAGA 
    TACCACCACC AAGCCAGAAG AAGAAACCGC GGCAGAGCAT CATCCACCGA 
    CAGTGACGGA AACAGAAACT GCATCGACGG AGAAACAAGA GGTTAAAGAC 
    GAAGCATCGC AGAAAGAAGT AGCTGAAGAG AAAAAGAGTA TGATTCCACA 
    GAATCTTGGT TCATTCAAAG AAGAAAGCAG CAAACTTTCT GATCTATCTA 
    ATTCCGAGAA GAAATCACTC GATGAACTAA AACATCTAGT TCGAGAAGCT 
    CTAGACAATC ACCAATTCAC CAACACACCA GAAGAAGTCA AGATTTGGGG 
    GATTCCATTA CTTGAAGACG ATAGAAGCGA CGTCGTTTTG TTAAAATTCC 
    TAAGAGCTAG GGAGTTCAAG GTGAAAGATT CGTTTGCTAT GCTCAAGAAC 
    ACAATCAAGT GGAGAAAGGA GTTCAAGATC GATGAATTGG TCGAGGAAGA 
    TCTTGTGGAT GATCTTGACA AGGTTGTGTT TATGCATGGA CATGACCGAG 
    AAGGTCACCC TGTTTGTTAC AATGTCTATG GTGAGTTTCA GAACAAGGAG 
    CTTTATAATA AGACGTTTTC TGATGAGGAA AAGAGGAAAC ATTTCTTGAG 
    GACTAGGATT CAGTTCTTGG AGAGGAGTAT AAGGAAGCTA GATTTTAGCT 
    CTGGTGGGGT TTCTACTATT TTTCAGGTTA ATGATATGAA GAATTCTCCG 
    GGGTTAGGGA AGAAAGAGCT TAGATCAGCT ACTAAGCAAG CTGTTGAGTT 
    GCTTCAGGAC AATTACCCTG AGTTTGTCTT CAAACAGGCT TTTATCAATG 
    TTCCTTGGTG GTACCTTGTG TTTTATACTG TGATTGGTCC GTTCATGACA 
    CCAAGATCAA AGAGCAAGCT TGTGTTTGCT GGTCCTTCGC GTTCAGCTGA 
    AACCCTATTC AAATACATAT CACCCGAGCA AGTTCCAGTA CAATATGGTG 
    GATTGAGTGT TGATCCTTGC GACTGCAATC CAGACTTTTC GTTGGAAGAT 
    TCAGCCTCTG AGATCACTGT TAAGCCCGGA ACAAAACAAA CTGTTGAGAT 
    CATAATCTAT GAGAAATGTG AACTTGTGTG GGAGATAAGG GTAACTGGAT 
    GGGAAGTGAG CTACAAGGCT GAATTTGTGC CGGAAGAGAA AGATGCTTAC 
    ACGGTGGTTA TACAAAAACC GAGGAAGATG AGACCATCCG ATGAACCGGT 
    GTTAACCCAT AGCTTCAAAG TGAATGAGCT TGGCAAGGTT TTACTCACAG 
    TAGACAACCC AACCTCTAAG AAGAAGAAGC TCGTTTACAG GTTCAATGTC 
    AAACCTCTCT AAGTTTTAAG AACCAAATGA AAAATGTTTC CAAACTTTGT 
    TTTATTTTAC AAAAAATGTT GTTTCTAGAC TTTTGTTTTT CTTGAAACAG 
    AAGTGAGATA TCTTATGTGT GTTTGTATAT GTGAGTGTTT ACTTTATCAT 
    ATCATATAAA TTATGTGTGG TTTATTTTGC TCTTGTAATC AATCATTTGT 
    GGAGAATATA TTACTACATG ACTTTATGAA ATAAAGATCT TTAAATCAC

    Gene models with high sequence identity

    1. AT1G72160.1 [+] show detail - Sec14p-like phosphatidylinositol transfer family protein
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Cellular retinaldehyde-binding/triple function, C-terminal 19.65
    ProfileScan GOLD 10.96
    superfamily Cellular retinaldehyde-binding/triple function, C-terminal 5.7e-37
    superfamily Phosphatidylinositol transfer protein-like, N-terminal 3.7e-16
    HMMPfam Cellular retinaldehyde-binding/triple function, C-terminal 1.3e-23
    HMMPfam Cellular retinaldehyde-binding/triple function, N-terminal 5.5e-09
    Coil coiled-coil 0
    HMMPanther SEC14 CYTOSOLIC FACTOR-RELATED 6.6e-147
    HMMPanther SEC14 RELATED PROTEIN 6.6e-147
    Gene3D no description 1.7e-09
    Gene3D Cellular retinaldehyde-binding/triple function, C-terminal 1.1e-42
    HMMSmart Cellular retinaldehyde-binding/triple function, C-terminal 9.8e-36

    See the detailed result >

    AT1G72160.1

    Model type
    Protein coding
    Short Description
    Sec14p-like phosphatidylinositol transfer family protein
    Computational Description
    Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G09160.1); Has 4473 Blast hits to 3903 proteins in 364 species: Archae - 35; Bacteria - 264; Metazoa - 1504; Fungi - 917; Plants - 883; Viruses - 13; Other Eukaryotes - 857 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR