F11238

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11238

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11238

Determination of introduced cDNA(s)

  • RAFL09-11-I21 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-11-I21 - Resource: pda05404

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-11-I21 - full reading
    AGGAACAACA ATCACAGAAC AAGACGGCAC AAGCAAAAAA AGGCTGAAGA 
    ACCTACTACT ACCACTCTCG TTACACCGGA AAAGCTACCT TCTCCGAGCC
    TCACGCCTTC TGAAGTATCT GAATCTACTC AAGATGCCCT ACCGACAGAG
    ACAGAAACTC TGGAGAAAGT GACTGAGACT AATCCACCGG AAACTGCAGA
    TACCACCACC AAGCCAGAAG AAGAAACCGC GGCAGAGCAT CATCCACCGA
    CAGTGACGGA AACAGAAACT GCATCGACGG AGAAACAAGA GGTTAAAGAC
    GAAGCATCGC AGAAAGAAGT AGCTGAAGAG AAAAAGAGTA TGATTCCACA
    GAATCTTGGT TCATTCAAAG AAGAAAGCAG CAAACTTTCT GATCTATCTA
    ATTCCGAGAA GAAATCACTC GATGAACTAA AACATCTAGT TCGAGAAGCT
    CTAGACAATC ACCAATTCAC CAACACACCA GAAGAAGTCA AGATTTGGGG
    GATTCCATTA CTTGAAGACG ATAGAAGCGA CGTCGTTTTG TTAAAATTCC
    TAAGAGCTAG GGAGTTCAAG GTGAAAGATT CGTTTGCTAT GCTCAAGAAC
    ACAATCAAGT GGAGAAAGGA GTTCAAGATC GATGAATTGG TCGAGGAAGA
    TCTTGTGGAT GATCTTGACA AGGTTGTGTT TATGCATGGA CATGACCGAG
    AAGGTCACCC TGTTTGTTAC AATGTCTATG GTGAGTTTCA GAACAAGGAG
    CTTTATAATA AGACGTTTTC TGATGAGGAA AAGAGGAAAC ATTTCTTGAG
    GACTAGGATT CAGTTCTTGG AGAGGAGTAT AAGGAAGCTA GATTTTAGCT
    CTGGTGGGGT TTCTACTATT TTTCAGGTTA ATGATATGAA GAATTCTCCG
    GGGTTAGGGA AGAAAGAGCT TAGATCAGCT ACTAAGCAAG CTGTTGAGTT
    GCTTCAGGAC AATTACCCTG AGTTTGTCTT CAAACAGGCT TTTATCAATG
    TTCCTTGGTG GTACCTTGTG TTTTATACTG TGATTGGTCC GTTCATGACA
    CCAAGATCAA AGAGCAAGCT TGTGTTTGCT GGTCCTTCGC GTTCAGCTGA
    AACCCTATTC AAATACATAT CACCCGAGCA AGTTCCAGTA CAATATGGTG
    GATTGAGTGT TGATCCTTGC GACTGCAATC CAGACTTTTC GTTGGAAGAT
    TCAGCCTCTG AGATCACTGT TAAGCCCGGA ACAAAACAAA CTGTTGAGAT
    CATAATCTAT GAGAAATGTG AACTTGTGTG GGAGATAAGG GTAACTGGAT
    GGGAAGTGAG CTACAAGGCT GAATTTGTGC CGGAAGAGAA AGATGCTTAC
    ACGGTGGTTA TACAAAAACC GAGGAAGATG AGACCATCCG ATGAACCGGT
    GTTAACCCAT AGCTTCAAAG TGAATGAGCT TGGCAAGGTT TTACTCACAG
    TAGACAACCC AACCTCTAAG AAGAAGAAGC TCGTTTACAG GTTCAATGTC
    AAACCTCTCT AAGTTTTAAG AACCAAATGA AAAATGTTTC CAAACTTTGT
    TTTATTTTAC AAAAAATGTT GTTTCTAGAC TTTTGTTTTT CTTGAAACAG
    AAGTGAGATA TCTTATGTGT GTTTGTATAT GTGAGTGTTT ACTTTATCAT
    ATCATATAAA TTATGTGTGG TTTATTTTGC TCTTGTAATC AATCATTTGT
    GGAGAATATA TTACTACATG ACTTTATGAA ATAAAGATCT TTAAATCAC

    Gene models with high sequence identity

    1. AT1G72160.1 [+] show detail - Sec14p-like phosphatidylinositol transfer family protein
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Cellular retinaldehyde-binding/triple function, C-terminal 19.65
    ProfileScan GOLD 10.96
    superfamily Cellular retinaldehyde-binding/triple function, C-terminal 5.7e-37
    superfamily Phosphatidylinositol transfer protein-like, N-terminal 3.7e-16
    HMMPfam Cellular retinaldehyde-binding/triple function, C-terminal 1.3e-23
    HMMPfam Cellular retinaldehyde-binding/triple function, N-terminal 5.5e-09
    Coil coiled-coil 0
    HMMPanther SEC14 CYTOSOLIC FACTOR-RELATED 6.6e-147
    HMMPanther SEC14 RELATED PROTEIN 6.6e-147
    Gene3D no description 1.7e-09
    Gene3D Cellular retinaldehyde-binding/triple function, C-terminal 1.1e-42
    HMMSmart Cellular retinaldehyde-binding/triple function, C-terminal 9.8e-36

    See the detailed result >

    AT1G72160.1

    Model type
    Protein coding
    Short Description
    Sec14p-like phosphatidylinositol transfer family protein
    Computational Description
    Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G09160.1); Has 4473 Blast hits to 3903 proteins in 364 species: Archae - 35; Bacteria - 264; Metazoa - 1504; Fungi - 917; Plants - 883; Viruses - 13; Other Eukaryotes - 857 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR