F11318

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11318

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11318

Determination of introduced cDNA(s)

  • RAFL16-54-P05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-54-P05 - Resource: pda19877

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-54-P05 - full reading
    ATGTTTTAGC TTTAACTGCT TTTTTTTTGT TGTTGGTGTA ATGATATCAC 
    AGAGAGAAGA AAGAGAAGAG AAGAAGCAGA GAGTGATGGG AGATAAGAAA
    TTGATTTCAT CTTCTTCTTC TTCCTCGGTT TACGATACTC GTATCAATCA
    TCATCTTCAT CATCCTCCGT CTTCTTCCGA CGAAATCTCT CAGTTTCTCC
    GGCATATTTT CGACCGTTCT TCTCCTTTAC CTTCTTACTA CTCCCCGGCG
    ACGACTACAA CGACGGCGTC TTTGATTGGT GTGCACGGGA GCGGTGACCC
    ACATGCAGAT AACTCGAGAA GTCTCGTTTC TCATCATCCA CCGTCAGATT
    CTGTGCTTAT GTCGAAACGT GTCGGAGATT TCTCTGAGGT TTTAATCGGC
    GGAGGATCAG GCTCAGCCGC CGCGTGTTTT GGTTTCTCCG GTGGTGGTAA
    TAATAACAAC GTTCAAGGAA ATAGCTCTGG GACTCGAGTA TCGTCTTCTT
    CCGTTGGAGC TAGTGGCAAC GAGACAGATG AGTATGACTG TGAAAGCGAG
    GAAGGAGGAG AAGCTGTAGT TGATGAAGCT CCCTCTTCCA AGTCAGGTCC
    TTCTTCTCGT AGTTCATCTA AAAGATGCAG AGCTGCTGAA GTTCATAATC
    TCTCTGAGAA GAGGAGGAGA AGTAGAATTA ATGAAAAAAT GAAAGCTTTA
    CAAAGTCTCA TCCCTAATTC AAATAAGACG GATAAGGCTT CAATGCTTGA
    TGAAGCCATT GAGTATCTGA AACAGCTTCA GCTCCAAGTT CAGATGTTGA
    CTATGAGAAA TGGAATAAAC TTGCATCCTT TGTGTTTACC TGGAACTACA
    TTACACCCAT TGCAACTCTC TCAGATTCGA CCCCCTGAAG CAACCAATGA
    TCCTCTGCTT AATCATACCA ATCAGTTTGC TTCGACTTCT AATGCACCGG
    AAATGATCAA TACTGTGGCT TCTTCATACG CTTTGGAACC TTCTATTCGC
    AGTCACTTTG GACCTTTCCC TCTCCTTACT TCACCCGTGG AGATGAGTCG
    GGAAGGTGGG TTAACTCATC CAAGGTTGAA CATTGGTCAT TCCAACGCAA
    ACATAACCGG GGAACAAGCT CTGTTTGATG GACAACCTGA CCTAAAAGAT
    CGAATTACTT GAACAGTGTC CCAACTTCGG GATCTCTATG TGTTCTTGTT
    TCTTAGAACG CAAGCCATAA AGCTGTCTGA CAATGGAGAT GCATTTAACT
    GTCTTTATTT TTTCTAAGGT TCTATTTAAA ATCAATTGTT GGTGACACGA
    ATTCTAGAGT CTAATCTTTT GGATCTAATA GCTATATATA AAAAGGACTG
    AAATTTTATT ACAAAGTAAT TGACTAATTG TTAGATTGTT GTATGTTTAT
    GGTGGATGTA AATTTTCTAG ATCATCTTCG TATTGTATTT GAGAGTTTGA
    TACTCGATGG CTTTGGATAT GTAAATTACC CCGATAAGCT TCTAGAGAAG
    TTTTCGATTC TAAAAAAAAA A

    Gene models with high sequence identity

    1. AT4G36930.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Helix-loop-helix DNA-binding domain 0.000000000000063
    ProfileScan Helix-loop-helix DNA-binding domain 15.833
    HMMSmart Helix-loop-helix DNA-binding domain 4e-18
    superfamily Helix-loop-helix DNA-binding 1.8e-18
    Coil coiled-coil 0
    HMMPanther TRANSCRIPTION FACTOR EC 0.000000029
    HMMPanther BASIC HELIX-LOOP-HELIX/LEUCINE ZIPPER TRANSCR 0.000000029
    Gene3D Helix-loop-helix DNA-binding 0.000000027

    See the detailed result >

    AT4G36930.1

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Curator Summary
    Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy.
    Computational Description
    SPATULA (SPT); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G67110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR