F11318

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11318

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11318

Determination of introduced cDNA(s)

  • RAFL16-54-P05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-54-P05 - Resource: pda19877

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-54-P05 - full reading 
    ATGTTTTAGC TTTAACTGCT TTTTTTTTGT TGTTGGTGTA ATGATATCAC 
    AGAGAGAAGA AAGAGAAGAG AAGAAGCAGA GAGTGATGGG AGATAAGAAA 
    TTGATTTCAT CTTCTTCTTC TTCCTCGGTT TACGATACTC GTATCAATCA 
    TCATCTTCAT CATCCTCCGT CTTCTTCCGA CGAAATCTCT CAGTTTCTCC 
    GGCATATTTT CGACCGTTCT TCTCCTTTAC CTTCTTACTA CTCCCCGGCG 
    ACGACTACAA CGACGGCGTC TTTGATTGGT GTGCACGGGA GCGGTGACCC 
    ACATGCAGAT AACTCGAGAA GTCTCGTTTC TCATCATCCA CCGTCAGATT 
    CTGTGCTTAT GTCGAAACGT GTCGGAGATT TCTCTGAGGT TTTAATCGGC 
    GGAGGATCAG GCTCAGCCGC CGCGTGTTTT GGTTTCTCCG GTGGTGGTAA 
    TAATAACAAC GTTCAAGGAA ATAGCTCTGG GACTCGAGTA TCGTCTTCTT 
    CCGTTGGAGC TAGTGGCAAC GAGACAGATG AGTATGACTG TGAAAGCGAG 
    GAAGGAGGAG AAGCTGTAGT TGATGAAGCT CCCTCTTCCA AGTCAGGTCC 
    TTCTTCTCGT AGTTCATCTA AAAGATGCAG AGCTGCTGAA GTTCATAATC 
    TCTCTGAGAA GAGGAGGAGA AGTAGAATTA ATGAAAAAAT GAAAGCTTTA 
    CAAAGTCTCA TCCCTAATTC AAATAAGACG GATAAGGCTT CAATGCTTGA 
    TGAAGCCATT GAGTATCTGA AACAGCTTCA GCTCCAAGTT CAGATGTTGA 
    CTATGAGAAA TGGAATAAAC TTGCATCCTT TGTGTTTACC TGGAACTACA 
    TTACACCCAT TGCAACTCTC TCAGATTCGA CCCCCTGAAG CAACCAATGA 
    TCCTCTGCTT AATCATACCA ATCAGTTTGC TTCGACTTCT AATGCACCGG 
    AAATGATCAA TACTGTGGCT TCTTCATACG CTTTGGAACC TTCTATTCGC 
    AGTCACTTTG GACCTTTCCC TCTCCTTACT TCACCCGTGG AGATGAGTCG 
    GGAAGGTGGG TTAACTCATC CAAGGTTGAA CATTGGTCAT TCCAACGCAA 
    ACATAACCGG GGAACAAGCT CTGTTTGATG GACAACCTGA CCTAAAAGAT 
    CGAATTACTT GAACAGTGTC CCAACTTCGG GATCTCTATG TGTTCTTGTT 
    TCTTAGAACG CAAGCCATAA AGCTGTCTGA CAATGGAGAT GCATTTAACT 
    GTCTTTATTT TTTCTAAGGT TCTATTTAAA ATCAATTGTT GGTGACACGA 
    ATTCTAGAGT CTAATCTTTT GGATCTAATA GCTATATATA AAAAGGACTG 
    AAATTTTATT ACAAAGTAAT TGACTAATTG TTAGATTGTT GTATGTTTAT 
    GGTGGATGTA AATTTTCTAG ATCATCTTCG TATTGTATTT GAGAGTTTGA 
    TACTCGATGG CTTTGGATAT GTAAATTACC CCGATAAGCT TCTAGAGAAG 
    TTTTCGATTC TAAAAAAAAA A

    Gene models with high sequence identity

    1. AT4G36930.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Helix-loop-helix DNA-binding domain 6.3e-14
    ProfileScan Helix-loop-helix DNA-binding domain 15.833
    HMMSmart Helix-loop-helix DNA-binding domain 4e-18
    superfamily Helix-loop-helix DNA-binding 1.8e-18
    Coil coiled-coil 0
    HMMPanther TRANSCRIPTION FACTOR EC 2.9e-08
    HMMPanther BASIC HELIX-LOOP-HELIX/LEUCINE ZIPPER TRANSCR 2.9e-08
    Gene3D Helix-loop-helix DNA-binding 2.7e-08

    See the detailed result >

    AT4G36930.1

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Curator Summary
    Encodes a transcription factor of the bHLH protein family. Mutants have abnormal, unfused carpels and reduced seed dormancy.
    Computational Description
    SPATULA (SPT); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G67110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR