F11328

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11328

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11328

Determination of introduced cDNA(s)

  • RAFL06-15-I24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-15-I24 - Resource: pda03211

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-15-I24 - full reading
    CTCATTTTCC ACCATTAAAA AACCTCTCTA CTCTCTCCTC AAAAACTCAA 
    AAGAGCAAAA AAAAGAGAAG AAGAATCAAA ATCCCACACA ATGGCAACAC
    ACTCTTCCTT CACCGCAACA ACACCTCTCT TTCTCATCGT TCTTCTATCC
    CTATCCTCCG TCTCAGTTCT CGGCGCATCT CACCACCACG CAACGGCGCC
    GGCTCCGTCT GTAGACTGTT CGACTCTCAT ACTCAACATG GCTGACTGTT
    TATCCTTCGT TTCGAGCGGA GGCACGGTGG CGAAACCGGA AGGTACATGT
    TGCTCTGGTC TTAAGACGGT GCTTAAAGCT GACTCTCAGT GTCTATGTGA
    AGCGTTTAAG AGCAGTGCTT CTCTTGGAGT TACTTTGAAT ATCACTAAGG
    CTTCTACTCT TCCCGCCGCA TGCAAGCTTC ACGCTCCTTC TATCGCTACT
    TGTGGATTGT CTGTTGCTCC AAGTACTGCT CCAGGTCTTG CTCCAGGAGT
    AGCTGCTGCT GGACCTGAGA CAGCCGGATT TCTAGCTCCA AATCCTTCTT
    CAGGGAACGA TGGATCTTCT TTGATTCCGA CCTCGTTCAC AACTGTACTC
    AGTGCCGTAC TGTTCGTTTT GTTCTTCTCT AGTGCGTAAA AAAAAACCTG
    AATCTTTTTT CACCAGCTAG ATTTGGCTGT ATGAAATTGA TTAATGGTTT
    TTATTAGGGT TAATCTATGT ATGTTTTGGA GTGTTCTGTT TTTAGACCAT
    ATCGGTTTCT CTATTACTAG CGTTTACTCT TTTAGTTTAT GTTATTACTT
    TGTCTCAC

    Gene models with high sequence identity

    1. AT5G64080.1 [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 5.1e-08
    FPrintScan Plant lipid transfer protein/Par allergen 9.8e-06
    FPrintScan Plant lipid transfer protein/Par allergen 9.8e-06
    FPrintScan Plant lipid transfer protein/Par allergen 9.8e-06
    Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 2.3e-09
    HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 5.8e-08
    superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 5.3e-21

    See the detailed result >

    AT5G64080.1

    Model type
    Protein coding
    Short Description
    Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
    Computational Description
    Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G13820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR