F11328

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11328

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11328

Determination of introduced cDNA(s)

  • RAFL06-15-I24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-15-I24 - Resource: pda03211

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-15-I24 - full reading 
    CTCATTTTCC ACCATTAAAA AACCTCTCTA CTCTCTCCTC AAAAACTCAA 
    AAGAGCAAAA AAAAGAGAAG AAGAATCAAA ATCCCACACA ATGGCAACAC 
    ACTCTTCCTT CACCGCAACA ACACCTCTCT TTCTCATCGT TCTTCTATCC 
    CTATCCTCCG TCTCAGTTCT CGGCGCATCT CACCACCACG CAACGGCGCC 
    GGCTCCGTCT GTAGACTGTT CGACTCTCAT ACTCAACATG GCTGACTGTT 
    TATCCTTCGT TTCGAGCGGA GGCACGGTGG CGAAACCGGA AGGTACATGT 
    TGCTCTGGTC TTAAGACGGT GCTTAAAGCT GACTCTCAGT GTCTATGTGA 
    AGCGTTTAAG AGCAGTGCTT CTCTTGGAGT TACTTTGAAT ATCACTAAGG 
    CTTCTACTCT TCCCGCCGCA TGCAAGCTTC ACGCTCCTTC TATCGCTACT 
    TGTGGATTGT CTGTTGCTCC AAGTACTGCT CCAGGTCTTG CTCCAGGAGT 
    AGCTGCTGCT GGACCTGAGA CAGCCGGATT TCTAGCTCCA AATCCTTCTT 
    CAGGGAACGA TGGATCTTCT TTGATTCCGA CCTCGTTCAC AACTGTACTC 
    AGTGCCGTAC TGTTCGTTTT GTTCTTCTCT AGTGCGTAAA AAAAAACCTG 
    AATCTTTTTT CACCAGCTAG ATTTGGCTGT ATGAAATTGA TTAATGGTTT 
    TTATTAGGGT TAATCTATGT ATGTTTTGGA GTGTTCTGTT TTTAGACCAT 
    ATCGGTTTCT CTATTACTAG CGTTTACTCT TTTAGTTTAT GTTATTACTT 
    TGTCTCAC

    Gene models with high sequence identity

    1. AT5G64080.1 [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 0.000000051
    FPrintScan Plant lipid transfer protein/Par allergen 0.0000098
    FPrintScan Plant lipid transfer protein/Par allergen 0.0000098
    FPrintScan Plant lipid transfer protein/Par allergen 0.0000098
    Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 0.0000000023
    HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 0.000000058
    superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 5.3e-21

    See the detailed result >

    AT5G64080.1

    Model type
    Protein coding
    Short Description
    Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
    Computational Description
    Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G13820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR