F11336

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11336

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11336

Determination of introduced cDNA(s)

  • RAFL06-86-N24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-86-N24 - Resource: pda03902

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-86-N24 - full reading 
    CTCTCTCTGC ATGCATCTTT CTCTCTATTA ATCTCTCCAG TATTTGTCAG 
    GATTTGGGTA TTTTTTTAAT AACGATCAGT GTCCAATCTC TCTTATCGTC 
    TTCATAAGTT TCCTATTATT TCATTCTTCT TCTTCTTTAT TCTCATTTCT 
    CTCTCTCTCT CTTTTTACTC ACAGACAAAT CTTTTTCACA TCTCTTTGCA 
    AATTCTTGAG AATTCATTCA AGTTACATAA AAAGCTGAGA GCAATGAAGA 
    AAATTGTGTT AAAGCTGGAT TTGCATGACG ATAGGGCAAA ACAAAAGGCC 
    CTTAAAACGG TTTCTACTCT CCCAGGAATC GATTCCATTG CAATGGACAT 
    GAAGGAGAAG AAATTGACGG TTATTGGAAC CGTGGATCCG GTAAATGTAG 
    TAAGTAAGCT AAGAAAGTAT TGGCCGATGA CGGATATCGT ACTAGTGGGA 
    CCTGCGAAAG AGCCGGAAAA GGAGAAGAAG GAGGAGCCGA AGAAGGAAGG 
    TGGTGGCGAG CCGCCAAAGA AAGAAGGAGA AGCTCCAAAA GAAGAAGGGA 
    AAAAGGAAGG AGAAGCACCG AAGAAGGAAG AAGAGAAGAA AGAAGGTGGC 
    GATAAGAAGG AAGGAGAGAA GAAAGATCAA CCACAAGCGC AGCCGCAACC 
    AGTTGTGCCG CCACCTGATC ATGTGTTGGA ACTTGTAAAG GCGTATAAAG 
    CATATAATCC TCACCTAACA ACGTATTACT ACGCCCAAAG CATCGAAGAA 
    AACCCTAATG CTTGCGTTAT ATGTTGAAAT ATTTATAATG TGATATATTT 
    TGGGGAAAAG ATGGACCGAT CTATATATAG TCATGAGGAT GAAGAATAAG 
    AAACAAAGGA TATATCTTAG ACTTCGGATG GGATCGGATA TGTTTTTGTC 
    TCCTCGATAA TGCGGGGAAG TTTTATTTCC TTAAATCGAT TTCGATGATA 
    TGTTTTGTGT ATATATCGTC GATAGTACTA GAATTTTATT TTTTCACTTT 
    GAAGGTAACT TTCTGTAAAG AAAAAAAAAA AAAAA

    Gene models with high sequence identity

    1. AT1G01490.1 [+] show detail - Heavy metal transport/detoxification superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Heavy metal transport/detoxification protein 4.1e-07
    superfamily Heavy metal transport/detoxification protein 5.5e-06
    HMMPanther UNCHARACTERIZED 7.2e-82
    HMMPanther COPPER TRANSPORT PROTEIN ATOX1-RELATED 7.2e-82

    See the detailed result >

    AT1G01490.1

    Model type
    Protein coding
    Short Description
    Heavy metal transport/detoxification superfamily protein
    Computational Description
    Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT1G63950.1); Has 7083 Blast hits to 3987 proteins in 399 species: Archae - 47; Bacteria - 875; Metazoa - 1731; Fungi - 337; Plants - 1157; Viruses - 96; Other Eukaryotes - 2840 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR